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                },
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                },
                {
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                    "firstName": "Chun-Kit",
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            ],
            "abstractNote": "In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many  scientists have entered the field. Our knowledge base and relevant new  technologies have also been expanding. Thus, it is important to formulate on a  regular basis updated guidelines for monitoring autophagy in different organisms.  Despite numerous reviews, there continues to be confusion regarding acceptable  methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we  present a set of guidelines for investigators to select and interpret methods to  examine autophagy and related processes, and for reviewers to provide realistic  and reasonable critiques of reports that are focused on these processes. These  guidelines are not meant to be a dogmatic set of rules, because the  appropriateness of any assay largely depends on the question being asked and the  system being used. Moreover, no individual assay is perfect for every situation,  calling for the use of multiple techniques to properly monitor autophagy in each  experimental setting. Finally, several core components of the autophagy machinery  have been implicated in distinct autophagic processes (canonical and noncanonical  autophagy), implying that genetic approaches to block autophagy should rely on  targeting two or more autophagy-related genes that ideally participate in  distinct steps of the pathway. Along similar lines, because multiple proteins  involved in autophagy also regulate other cellular pathways including apoptosis,  not all of them can be used as a specific marker for bona fide autophagic  responses. Here, we critically discuss current methods of assessing autophagy and  the information they can, or cannot, provide. Our ultimate goal is to encourage  intellectual and technical innovation in the field.",
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            "publisher": "",
            "place": "United States",
            "date": "2021 Jan",
            "volume": "17",
            "issue": "1",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "1-382",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Autophagy",
            "DOI": "10.1080/15548627.2020.1797280",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "33634751",
            "PMCID": "PMC7996087",
            "ISSN": "1554-8635 1554-8627",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "*Autophagy/physiology"
                },
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Autophagosome"
                },
                {
                    "tag": "Autophagosomes"
                },
                {
                    "tag": "Autophagy-Related Proteins/metabolism"
                },
                {
                    "tag": "Biological Assay/standards"
                },
                {
                    "tag": "Biomarkers"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "LC3"
                },
                {
                    "tag": "Lysosomes"
                },
                {
                    "tag": "cancer"
                },
                {
                    "tag": "flux"
                },
                {
                    "tag": "lysosome"
                },
                {
                    "tag": "macroautophagy"
                },
                {
                    "tag": "neurodegeneration"
                },
                {
                    "tag": "phagophore"
                },
                {
                    "tag": "stress"
                },
                {
                    "tag": "vacuole"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
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            "publicationTitle": "Autophagy",
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                {
                    "tag": "Biological Assay/methods/*standards"
                },
                {
                    "tag": "Computer Simulation"
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                {
                    "tag": "Humans"
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                {
                    "tag": "LC3"
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                {
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                {
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            "itemType": "journalArticle",
            "title": "Global burden of 292 causes of death in 204 countries and territories and 660 subnational locations, 1990-2023: a systematic analysis for the Global Burden of  Disease Study 2023.",
            "creators": [],
            "abstractNote": "BACKGROUND: Timely and comprehensive analyses of causes of death stratified by age, sex, and location are essential for shaping effective health policies aimed  at reducing global mortality. The Global Burden of Diseases, Injuries, and Risk  Factors Study (GBD) 2023 provides cause-specific mortality estimates measured in  counts, rates, and years of life lost (YLLs). GBD 2023 aimed to enhance our  understanding of the relationship between age and cause of death by quantifying  the probability of dying before age 70 years (70q0) and the mean age at death by  cause and sex. This study enables comparisons of the impact of causes of death  over time, offering a deeper understanding of how these causes affect global  populations. METHODS: GBD 2023 produced estimates for 292 causes of death  disaggregated by age-sex-location-year in 204 countries and territories and 660  subnational locations for each year from 1990 until 2023. We used a modelling  tool developed for GBD, the Cause of Death Ensemble model (CODEm), to estimate  cause-specific death rates for most causes. We computed YLLs as the product of  the number of deaths for each cause-age-sex-location-year and the standard life  expectancy at each age. Probability of death was calculated as the chance of  dying from a given cause in a specific age period, for a specific population.  Mean age at death was calculated by first assigning the midpoint age of each age  group for every death, followed by computing the mean of all midpoint ages across  all deaths attributed to a given cause. We used GBD death estimates to calculate  the observed mean age at death and to model the expected mean age across causes,  sexes, years, and locations. The expected mean age reflects the expected mean age  at death for individuals within a population, based on global mortality rates and  the population's age structure. Comparatively, the observed mean age represents  the actual mean age at death, influenced by all factors unique to a  location-specific population, including its age structure. As part of the  modelling process, uncertainty intervals (UIs) were generated using the 2·5th and  97·5th percentiles from a 250-draw distribution for each metric. Findings are  reported as counts and age-standardised rates. Methodological improvements for  cause-of-death estimates in GBD 2023 include a correction for the  misclassification of deaths due to COVID-19, updates to the method used to  estimate COVID-19, and updates to the CODEm modelling framework. This analysis  used 55 761 data sources, including vital registration and verbal autopsy data as  well as data from surveys, censuses, surveillance systems, and cancer registries,  among others. For GBD 2023, there were 312 new country-years of vital  registration cause-of-death data, 3 country-years of surveillance data, 51  country-years of verbal autopsy data, and 144 country-years of other data types  that were added to those used in previous GBD rounds. FINDINGS: The initial years  of the COVID-19 pandemic caused shifts in long-standing rankings of the leading  causes of global deaths: it ranked as the number one age-standardised cause of  death at Level 3 of the GBD cause classification hierarchy in 2021. By 2023,  COVID-19 dropped to the 20th place among the leading global causes, returning the  rankings of the leading two causes to those typical across the time series (ie,  ischaemic heart disease and stroke). While ischaemic heart disease and stroke  persist as leading causes of death, there has been progress in reducing their  age-standardised mortality rates globally. Four other leading causes have also  shown large declines in global age-standardised mortality rates across the study  period: diarrhoeal diseases, tuberculosis, stomach cancer, and measles. Other  causes of death showed disparate patterns between sexes, notably for deaths from  conflict and terrorism in some locations. A large reduction in age-standardised  rates of YLLs occurred for neonatal disorders. Despite this, neonatal disorders  remained the leading cause of global YLLs over the period studied, except in  2021, when COVID-19 was temporarily the leading cause. Compared to 1990, there  has been a considerable reduction in total YLLs in many vaccine-preventable  diseases, most notably diphtheria, pertussis, tetanus, and measles. In addition,  this study quantified the mean age at death for all-cause mortality and  cause-specific mortality and found noticeable variation by sex and location. The  global all-cause mean age at death increased from 46·8 years (95% UI 46·6-47·0)  in 1990 to 63·4 years (63·1-63·7) in 2023. For males, mean age increased from  45·4 years (45·1-45·7) to 61·2 years (60·7-61·6), and for females it increased  from 48·5 years (48·1-48·8) to 65·9 years (65·5-66·3), from 1990 to 2023. The  highest all-cause mean age at death in 2023 was found in the high-income  super-region, where the mean age for females reached 80·9 years (80·9-81·0) and  for males 74·8 years (74·8-74·9). By comparison, the lowest all-cause mean age at  death occurred in sub-Saharan Africa, where it was 38·0 years (37·5-38·4) for  females and 35·6 years (35·2-35·9) for males in 2023. Lastly, our study found  that all-cause 70q0 decreased across each GBD super-region and region from 2000  to 2023, although with large variability between them. For females, we found that  70q0 notably increased from drug use disorders and conflict and terrorism.  Leading causes that increased 70q0 for males also included drug use disorders, as  well as diabetes. In sub-Saharan Africa, there was an increase in 70q0 for many  non-communicable diseases (NCDs). Additionally, the mean age at death from NCDs  was lower than the expected mean age at death for this super-region. By  comparison, there was an increase in 70q0 for drug use disorders in the  high-income super-region, which also had an observed mean age at death lower than  the expected value. INTERPRETATION: We examined global mortality patterns over  the past three decades, highlighting-with enhanced estimation methods-the impacts  of major events such as the COVID-19 pandemic, in addition to broader trends such  as increasing NCDs in low-income regions that reflect ongoing shifts in the  global epidemiological transition. This study also delves into premature  mortality patterns, exploring the interplay between age and causes of death and  deepening our understanding of where targeted resources could be applied to  further reduce preventable sources of mortality. We provide essential insights  into global and regional health disparities, identifying locations in need of  targeted interventions to address both communicable and non-communicable  diseases. There is an ever-present need for strengthened health-care systems that  are resilient to future pandemics and the shifting burden of disease,  particularly among ageing populations in regions with high mortality rates.  Robust estimates of causes of death are increasingly essential to inform health  priorities and guide efforts toward achieving global health equity. The need for  global collaboration to reduce preventable mortality is more important than ever,  as shifting burdens of disease are affecting all nations, albeit at different  paces and scales. FUNDING: Gates Foundation.",
            "publicationTitle": "Lancet (London, England)",
            "publisher": "",
            "place": "England",
            "date": "2025 Oct 18",
            "volume": "406",
            "issue": "10513",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "1811-1872",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Lancet",
            "DOI": "10.1016/S0140-6736(25)01917-8",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "41092928",
            "PMCID": "PMC12535838",
            "ISSN": "1474-547X 0140-6736",
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            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "Copyright © 2025 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 license.",
            "extra": "",
            "tags": [
                {
                    "tag": "*Global Burden of Disease/trends"
                },
                {
                    "tag": "Adolescent"
                },
                {
                    "tag": "Adult"
                },
                {
                    "tag": "Aged"
                },
                {
                    "tag": "Aged, 80 and over"
                },
                {
                    "tag": "Cause of Death/trends"
                },
                {
                    "tag": "Child"
                },
                {
                    "tag": "Child, Preschool"
                },
                {
                    "tag": "Female"
                },
                {
                    "tag": "Global Health/statistics & numerical data"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Infant"
                },
                {
                    "tag": "Infant, Newborn"
                },
                {
                    "tag": "Life Expectancy/trends"
                },
                {
                    "tag": "Male"
                },
                {
                    "tag": "Middle Aged"
                },
                {
                    "tag": "Mortality/trends"
                },
                {
                    "tag": "Risk Factors"
                },
                {
                    "tag": "Young Adult"
                }
            ],
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            "title": "Burden of 375 diseases and injuries, risk-attributable burden of 88 risk factors, and healthy life expectancy in 204 countries and territories, including 660  subnational locations, 1990-2023: a systematic analysis for the Global Burden of  Disease Study 2023.",
            "creators": [],
            "abstractNote": "BACKGROUND: For more than three decades, the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) has provided a framework to quantify health loss due  to diseases, injuries, and associated risk factors. This paper presents GBD 2023  findings on disease and injury burden and risk-attributable health loss, offering  a global audit of the state of world health to inform public health priorities.  This work captures the evolving landscape of health metrics across age groups,  sexes, and locations, while reflecting on the remaining post-COVID-19 challenges  to achieving our collective global health ambitions. METHODS: The GBD 2023  combined analysis estimated years lived with disability (YLDs), years of life  lost (YLLs), and disability-adjusted life-years (DALYs) for 375 diseases and  injuries, and risk-attributable burden associated with 88 modifiable risk  factors. Of the more than 310 000 total data sources used for all GBD 2023 (about  30% of which were new to this estimation round), more than 120 000 sources were  used for estimation of disease and injury burden and 59 000 for risk factor  estimation, and included vital registration systems, surveys, disease registries,  and published scientific literature. Data were analysed using previously  established modelling approaches, such as disease modelling meta-regression  version 2.1 (DisMod-MR 2.1) and comparative risk assessment methods. Diseases and  injuries were categorised into four levels on the basis of the established GBD  cause hierarchy, as were risk factors using the GBD risk hierarchy. Estimates  stratified by age, sex, location, and year from 1990 to 2023 were focused on  disease-specific time trends over the 2010-23 period and presented as counts (to  three significant figures) and age-standardised rates per 100 000 person-years  (to one decimal place). For each measure, 95% uncertainty intervals [UIs] were  calculated with the 2·5th and 97·5th percentile ordered values from a 250-draw  distribution. FINDINGS: Total numbers of global DALYs grew 6·1% (95% UI 4·0-8·1),  from 2·64 billion (2·46-2·86) in 2010 to 2·80 billion (2·57-3·08) in 2023, but  age-standardised DALY rates, which account for population growth and ageing,  decreased by 12·6% (11·0-14·1), revealing large long-term health improvements.  Non-communicable diseases (NCDs) contributed 1·45 billion (1·31-1·61) global  DALYs in 2010, increasing to 1·80 billion (1·63-2·03) in 2023, alongside a  concurrent 4·1% (1·9-6·3) reduction in age-standardised rates. Based on DALY  counts, the leading level 3 NCDs in 2023 were ischaemic heart disease (193  million [176-209] DALYs), stroke (157 million [141-172]), and diabetes (90·2  million [75·2-107]), with the largest increases in age-standardised rates since  2010 occurring for anxiety disorders (62·8% [34·0-107·5]), depressive disorders  (26·3% [11·6-42·9]), and diabetes (14·9% [7·5-25·6]). Remarkable health gains  were made for communicable, maternal, neonatal, and nutritional (CMNN) diseases,  with DALYs falling from 874 million (837-917) in 2010 to 681 million (642-736) in  2023, and a 25·8% (22·6-28·7) reduction in age-standardised DALY rates. During  the COVID-19 pandemic, DALYs due to CMNN diseases rose but returned to  pre-pandemic levels by 2023. From 2010 to 2023, decreases in age-standardised  rates for CMNN diseases were led by rate decreases of 49·1% (32·7-61·0) for  diarrhoeal diseases, 42·9% (38·0-48·0) for HIV/AIDS, and 42·2% (23·6-56·6) for  tuberculosis. Neonatal disorders and lower respiratory infections remained the  leading level 3 CMNN causes globally in 2023, although both showed notable rate  decreases from 2010, declining by 16·5% (10·6-22·0) and 24·8% (7·4-36·7),  respectively. Injury-related age-standardised DALY rates decreased by 15·6%  (10·7-19·8) over the same period. Differences in burden due to NCDs, CMNN  diseases, and injuries persisted across age, sex, time, and location. Based on  our risk analysis, nearly 50% (1·27 billion [1·18-1·38]) of the roughly 2·80  billion total global DALYs in 2023 were attributable to the 88 risk factors  analysed in GBD. Globally, the five level 3 risk factors contributing the highest  proportion of risk-attributable DALYs were high systolic blood pressure (SBP),  particulate matter pollution, high fasting plasma glucose (FPG), smoking, and low  birthweight and short gestation-with high SBP accounting for 8·4% (6·9-10·0) of  total DALYs. Of the three overarching level 1 GBD risk factor  categories-behavioural, metabolic, and environmental and  occupational-risk-attributable DALYs rose between 2010 and 2023 only for  metabolic risks, increasing by 30·7% (24·8-37·3); however, age-standardised DALY  rates attributable to metabolic risks decreased by 6·7% (2·0-11·0) over the same  period. For all but three of the 25 leading level 3 risk factors,  age-standardised rates dropped between 2010 and 2023-eg, declining by 54·4%  (38·7-65·3) for unsafe sanitation, 50·5% (33·3-63·1) for unsafe water source, and  45·2% (25·6-72·0) for no access to handwashing facility, and by 44·9% (37·3-53·5)  for child growth failure. The three leading level 3 risk factors for which  age-standardised attributable DALY rates rose were high BMI (10·5% [0·1 to  20·9]), drug use (8·4% [2·6 to 15·3]), and high FPG (6·2% [-2·7 to 15·6];  non-significant). INTERPRETATION: Our findings underscore the complex and dynamic  nature of global health challenges. Since 2010, there have been large decreases  in burden due to CMNN diseases and many environmental and behavioural risk  factors, juxtaposed with sizeable increases in DALYs attributable to metabolic  risk factors and NCDs in growing and ageing populations. This long-observed  consequence of the global epidemiological transition was only temporarily  interrupted by the COVID-19 pandemic. The substantially decreasing CMNN disease  burden, despite the 2008 global financial crisis and pandemic-related  disruptions, is one of the greatest collective public health successes known.  However, these achievements are at risk of being reversed due to major cuts to  development assistance for health globally, the effects of which will hit  low-income countries with high burden the hardest. Without sustained investment  in evidence-based interventions and policies, progress could stall or reverse,  leading to widespread human costs and geopolitical instability. Moreover, the  rising NCD burden necessitates intensified efforts to mitigate exposure to  leading risk factors-eg, air pollution, smoking, and metabolic risks, such as  high SBP, BMI, and FPG-including policies that promote food security, healthier  diets, physical activity, and equitable and expanded access to potential  treatments, such as GLP-1 receptor agonists. Decisive, coordinated action is  needed to address long-standing yet growing health challenges, including  depressive and anxiety disorders. Yet this can be only part of the solution. Our  response to the NCD syndemic-the complex interaction of multiple health risks,  social determinants, and systemic challenges-will define the future landscape of  global health. To ensure human wellbeing, economic stability, and social equity,  global action to sustain and advance health gains must prioritise reducing  disparities by addressing socioeconomic and demographic determinants, ensuring  equitable health-care access, tackling malnutrition, strengthening health  systems, and improving vaccination coverage. We live in times of great  opportunity. FUNDING: Gates Foundation and Bloomberg Philanthropies.",
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            "date": "2025 Oct 18",
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            "rights": "Copyright © 2025 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 license. Published by Elsevier Ltd.. All rights  reserved.",
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            "tags": [
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                    "firstName": "Adrian V. S.",
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            ],
            "abstractNote": "BACKGROUND: A safe and efficacious vaccine against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), if deployed with high coverage, could  contribute to the control of the COVID-19 pandemic. We evaluated the safety and  efficacy of the ChAdOx1 nCoV-19 vaccine in a pooled interim analysis of four  trials. METHODS: This analysis includes data from four ongoing blinded,  randomised, controlled trials done across the UK, Brazil, and South Africa.  Participants aged 18 years and older were randomly assigned (1:1) to ChAdOx1  nCoV-19 vaccine or control (meningococcal group A, C, W, and Y conjugate vaccine  or saline). Participants in the ChAdOx1 nCoV-19 group received two doses  containing 5 × 10(10) viral particles (standard dose; SD/SD cohort); a subset in  the UK trial received a half dose as their first dose (low dose) and a standard  dose as their second dose (LD/SD cohort). The primary efficacy analysis included  symptomatic COVID-19 in seronegative participants with a nucleic acid  amplification test-positive swab more than 14 days after a second dose of  vaccine. Participants were analysed according to treatment received, with data  cutoff on Nov 4, 2020. Vaccine efficacy was calculated as 1 - relative risk  derived from a robust Poisson regression model adjusted for age. Studies are  registered at ISRCTN89951424 and ClinicalTrials.gov, NCT04324606, NCT04400838,  and NCT04444674. FINDINGS: Between April 23 and Nov 4, 2020, 23 848 participants  were enrolled and 11 636 participants (7548 in the UK, 4088 in Brazil) were  included in the interim primary efficacy analysis. In participants who received  two standard doses, vaccine efficacy was 62·1% (95% CI 41·0-75·7; 27 [0·6%] of  4440 in the ChAdOx1 nCoV-19 group vs71 [1·6%] of 4455 in the control group) and  in participants who received a low dose followed by a standard dose, efficacy was  90·0% (67·4-97·0; three [0·2%] of 1367 vs 30 [2·2%] of 1374;  p(interaction)=0·010). Overall vaccine efficacy across both groups was 70·4%  (95·8% CI 54·8-80·6; 30 [0·5%] of 5807 vs 101 [1·7%] of 5829). From 21 days after  the first dose, there were ten cases hospitalised for COVID-19, all in the  control arm; two were classified as severe COVID-19, including one death. There  were 74 341 person-months of safety follow-up (median 3·4 months, IQR 1·3-4·8):  175 severe adverse events occurred in 168 participants, 84 events in the ChAdOx1  nCoV-19 group and 91 in the control group. Three events were classified as  possibly related to a vaccine: one in the ChAdOx1 nCoV-19 group, one in the  control group, and one in a participant who remains masked to group allocation.  INTERPRETATION: ChAdOx1 nCoV-19 has an acceptable safety profile and has been  found to be efficacious against symptomatic COVID-19 in this interim analysis of  ongoing clinical trials. FUNDING: UK Research and Innovation, National Institutes  for Health Research (NIHR), Coalition for Epidemic Preparedness Innovations, Bill  & Melinda Gates Foundation, Lemann Foundation, Rede D'Or, Brava and Telles  Foundation, NIHR Oxford Biomedical Research Centre, Thames Valley and South  Midland's NIHR Clinical Research Network, and AstraZeneca.",
            "publicationTitle": "Lancet (London, England)",
            "publisher": "",
            "place": "England",
            "date": "2021 Jan 9",
            "volume": "397",
            "issue": "10269",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "99-111",
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            "journalAbbreviation": "Lancet",
            "DOI": "10.1016/S0140-6736(20)32661-1",
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            "accessDate": "",
            "PMID": "33306989",
            "PMCID": "PMC7723445",
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            "language": "eng",
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            "rights": "Copyright © 2021 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 license. Published by Elsevier Ltd.. All rights  reserved.",
            "extra": "",
            "tags": [
                {
                    "tag": "*COVID-19 Vaccines/adverse effects"
                },
                {
                    "tag": "Adolescent"
                },
                {
                    "tag": "Adult"
                },
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                    "tag": "Aged"
                },
                {
                    "tag": "Brazil"
                },
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                    "tag": "COVID-19/*prevention & control"
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                    "tag": "ChAdOx1 nCoV-19"
                },
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                    "tag": "Female"
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                {
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                },
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                },
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                    "tag": "Middle Aged"
                },
                {
                    "tag": "Single-Blind Method"
                },
                {
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                },
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            "abstractNote": "",
            "publicationTitle": "Blood advances",
            "publisher": "",
            "place": "United States",
            "date": "2026 Aug 25",
            "volume": "10",
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            "pages": "5734-5739",
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            "journalAbbreviation": "Blood Adv",
            "DOI": "10.1182/bloodadvances.2026020556",
            "citationKey": "",
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            "PMID": "42284702",
            "PMCID": "PMC13508629",
            "ISSN": "2473-9537 2473-9529",
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            "creatorSummary": "Kutzler et al.",
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            "itemType": "journalArticle",
            "title": "Coimmunization with an optimized IL-15 plasmid results in enhanced function and longevity of CD8 T cells that are partially independent of CD4 T cell help.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Michele A.",
                    "lastName": "Kutzler"
                },
                {
                    "creatorType": "author",
                    "firstName": "Tara M.",
                    "lastName": "Robinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Michael A.",
                    "lastName": "Chattergoon"
                },
                {
                    "creatorType": "author",
                    "firstName": "Daniel K.",
                    "lastName": "Choo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Andrew Y.",
                    "lastName": "Choo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Philip Y.",
                    "lastName": "Choe"
                },
                {
                    "creatorType": "author",
                    "firstName": "Mathura P.",
                    "lastName": "Ramanathan"
                },
                {
                    "creatorType": "author",
                    "firstName": "Rose",
                    "lastName": "Parkinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sagar",
                    "lastName": "Kudchodkar"
                },
                {
                    "creatorType": "author",
                    "firstName": "Yutaka",
                    "lastName": "Tamura"
                },
                {
                    "creatorType": "author",
                    "firstName": "Maninder",
                    "lastName": "Sidhu"
                },
                {
                    "creatorType": "author",
                    "firstName": "Vidia",
                    "lastName": "Roopchand"
                },
                {
                    "creatorType": "author",
                    "firstName": "J. Joseph",
                    "lastName": "Kim"
                },
                {
                    "creatorType": "author",
                    "firstName": "George N.",
                    "lastName": "Pavlakis"
                },
                {
                    "creatorType": "author",
                    "firstName": "Barbara K.",
                    "lastName": "Felber"
                },
                {
                    "creatorType": "author",
                    "firstName": "Thomas A.",
                    "lastName": "Waldmann"
                },
                {
                    "creatorType": "author",
                    "firstName": "Jean D.",
                    "lastName": "Boyer"
                },
                {
                    "creatorType": "author",
                    "firstName": "David B.",
                    "lastName": "Weiner"
                }
            ],
            "abstractNote": "DNA vaccines are a promising technology for the induction of Ag-specific immune responses, and much recent attention has gone into improving their immune  potency. In this study we test the feasibility of delivering a plasmid encoding  IL-15 as a DNA vaccine adjuvant for the induction of improved Ag-specific CD8(+)  T cellular immune responses. Because native IL-15 is poorly expressed, we used  PCR-based strategies to develop an optimized construct that expresses 80-fold  higher than the native IL-15 construct. Using a DNA vaccination model, we  determined that immunization with optimized IL-15 in combination with HIV-1gag  DNA constructs resulted in a significant enhancement of Ag-specific CD8(+) T cell  proliferation and IFN-gamma secretion, and strong induction of long-lived CD8(+)  T cell responses. In an influenza DNA vaccine model, coimmunization with plasmid  expressing influenza A PR8/34 hemagglutinin with the optimized IL-15 plasmid  generated improved long term CD8(+) T cellular immunity and protected the mice  against a lethal mucosal challenge with influenza virus. Because we observed that  IL-15 appeared to mostly adjuvant CD8(+) T cell function, we show that in the  partial, but not total, absence of CD4(+) T cell help, plasmid-delivered IL-15  could restore CD8 secondary immune responses to an antigenic DNA plasmid,  supporting the idea that the effects of IL-15 on CD8(+) T cell expansion require  the presence of low levels of CD4 T cells. These data suggest a role for enhanced  plasmid IL-15 as a candidate adjuvant for vaccine or immunotherapeutic studies.",
            "publicationTitle": "Journal of immunology (Baltimore, Md. : 1950)",
            "publisher": "",
            "place": "England",
            "date": "2005 Jul 1",
            "volume": "175",
            "issue": "1",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "112-123",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "J Immunol",
            "DOI": "10.4049/jimmunol.175.1.112",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "15972637",
            "PMCID": "",
            "ISSN": "0022-1767",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "AIDS Vaccines/genetics/immunology/pharmacology"
                },
                {
                    "tag": "Amino Acid Sequence"
                },
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Base Sequence"
                },
                {
                    "tag": "CD4-Positive T-Lymphocytes/*cytology/*immunology"
                },
                {
                    "tag": "Cell Proliferation"
                },
                {
                    "tag": "Cellular Senescence"
                },
                {
                    "tag": "Cloning, Molecular"
                },
                {
                    "tag": "Female"
                },
                {
                    "tag": "Genetic Vectors"
                },
                {
                    "tag": "HeLa Cells"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Immunization"
                },
                {
                    "tag": "Immunologic Memory"
                },
                {
                    "tag": "In Vitro Techniques"
                },
                {
                    "tag": "Influenza Vaccines/genetics/immunology/pharmacology"
                },
                {
                    "tag": "Interferon-gamma/biosynthesis"
                },
                {
                    "tag": "Interleukin-15/*genetics/*immunology"
                },
                {
                    "tag": "Lymphocyte Activation"
                },
                {
                    "tag": "Lymphocyte Cooperation"
                },
                {
                    "tag": "Mice"
                },
                {
                    "tag": "Mice, Inbred BALB C"
                },
                {
                    "tag": "Molecular Sequence Data"
                },
                {
                    "tag": "Plasmids"
                },
                {
                    "tag": "Transfection"
                },
                {
                    "tag": "Vaccines, DNA/genetics/immunology/pharmacology"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
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        }
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    {
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            "creatorSummary": "Berger et al.",
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            "version": 212704,
            "itemType": "journalArticle",
            "title": "Reduction of Progranulin-Induced Breast Cancer Stem Cell Propagation by Sortilin-Targeting Cyclotriazadisulfonamide (CADA) Compounds.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Karoline",
                    "lastName": "Berger"
                },
                {
                    "creatorType": "author",
                    "firstName": "Eva",
                    "lastName": "Pauwels"
                },
                {
                    "creatorType": "author",
                    "firstName": "Gabrielle",
                    "lastName": "Parkinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Göran",
                    "lastName": "Landberg"
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                {
                    "creatorType": "author",
                    "firstName": "Truc",
                    "lastName": "Le"
                },
                {
                    "creatorType": "author",
                    "firstName": "Violeta G.",
                    "lastName": "Demillo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Liezel A.",
                    "lastName": "Lumangtad"
                },
                {
                    "creatorType": "author",
                    "firstName": "Dylan E.",
                    "lastName": "Jones"
                },
                {
                    "creatorType": "author",
                    "firstName": "Md Azizul",
                    "lastName": "Islam"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ryan",
                    "lastName": "Olsen"
                },
                {
                    "creatorType": "author",
                    "firstName": "Topprasad",
                    "lastName": "Kapri"
                },
                {
                    "creatorType": "author",
                    "firstName": "Amarawan",
                    "lastName": "Intasiri"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kurt",
                    "lastName": "Vermeire"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sara",
                    "lastName": "Rhost"
                },
                {
                    "creatorType": "author",
                    "firstName": "Thomas W.",
                    "lastName": "Bell"
                }
            ],
            "abstractNote": "Cyclotriazadisulfonamide (CADA) compounds selectively down-modulate two human proteins of potential therapeutic interest, cluster of differentiation 4 (CD4)  and sortilin. Progranulin is secreted from some breast cancer cells, causing  dedifferentiation of receiving cancer cells and cancer stem cell proliferation.  Inhibition of progranulin binding to sortilin, its main receptor, can block  progranulin-induced metastatic breast cancer using a triple-negative in vivo  xenograft model. In the current study, seven CADA compounds (CADA, VGD020,  VGD071, TL020, TL023, LAL014, and DJ010) were examined for reduction of cellular  sortilin expression and progranulin-induced breast cancer stem cell propagation.  In addition, inhibition of progranulin-induced mammosphere formation was examined  and found to be most significant for TL020, TL023, VGD071, and LAL014. Full  experimental details are given for the synthesis and characterization of the four  new compounds (TL020, TL023, VGD071, and DJ010). Comparison of solubilities,  potencies, and cytotoxicities identified VGD071 as a promising candidate for  future studies using mouse breast cancer models.",
            "publicationTitle": "Journal of medicinal chemistry",
            "publisher": "",
            "place": "United States",
            "date": "2021 Sep 9",
            "volume": "64",
            "issue": "17",
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            "partNumber": "",
            "partTitle": "",
            "pages": "12865-12876",
            "series": "",
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            "seriesText": "",
            "journalAbbreviation": "J Med Chem",
            "DOI": "10.1021/acs.jmedchem.1c00943",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "34428050",
            "PMCID": "PMC10501753",
            "ISSN": "1520-4804 0022-2623",
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            "shortTitle": "",
            "language": "eng",
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            "callNumber": "",
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            "extra": "",
            "tags": [
                {
                    "tag": "Adaptor Proteins, Vesicular Transport/*metabolism"
                },
                {
                    "tag": "Antineoplastic Agents/chemical synthesis/chemistry/*pharmacology"
                },
                {
                    "tag": "Breast Neoplasms"
                },
                {
                    "tag": "Cell Line, Tumor"
                },
                {
                    "tag": "Cell Proliferation/*drug effects"
                },
                {
                    "tag": "Cell Survival/drug effects"
                },
                {
                    "tag": "Drug Delivery Systems"
                },
                {
                    "tag": "Drug Discovery"
                },
                {
                    "tag": "Female"
                },
                {
                    "tag": "Gene Expression Regulation, Neoplastic/drug effects"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Neoplastic Stem Cells/*drug effects"
                },
                {
                    "tag": "Progranulins/*pharmacology"
                },
                {
                    "tag": "Sortilin"
                },
                {
                    "tag": "Sulfonamides/chemistry/*pharmacology"
                }
            ],
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                "27Q945GJ"
            ],
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            "creatorSummary": "Patwardhan et al.",
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            "version": 212703,
            "itemType": "journalArticle",
            "title": "Building bridges between cellular and molecular structural biology.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Ardan",
                    "lastName": "Patwardhan"
                },
                {
                    "creatorType": "author",
                    "firstName": "Robert",
                    "lastName": "Brandt"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sarah J.",
                    "lastName": "Butcher"
                },
                {
                    "creatorType": "author",
                    "firstName": "Lucy",
                    "lastName": "Collinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "David",
                    "lastName": "Gault"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kay",
                    "lastName": "Grünewald"
                },
                {
                    "creatorType": "author",
                    "firstName": "Corey",
                    "lastName": "Hecksel"
                },
                {
                    "creatorType": "author",
                    "firstName": "Juha T.",
                    "lastName": "Huiskonen"
                },
                {
                    "creatorType": "author",
                    "firstName": "Andrii",
                    "lastName": "Iudin"
                },
                {
                    "creatorType": "author",
                    "firstName": "Martin L.",
                    "lastName": "Jones"
                },
                {
                    "creatorType": "author",
                    "firstName": "Paul K.",
                    "lastName": "Korir"
                },
                {
                    "creatorType": "author",
                    "firstName": "Abraham J.",
                    "lastName": "Koster"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ingvar",
                    "lastName": "Lagerstedt"
                },
                {
                    "creatorType": "author",
                    "firstName": "Catherine L.",
                    "lastName": "Lawson"
                },
                {
                    "creatorType": "author",
                    "firstName": "David",
                    "lastName": "Mastronarde"
                },
                {
                    "creatorType": "author",
                    "firstName": "Matthew",
                    "lastName": "McCormick"
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                {
                    "creatorType": "author",
                    "firstName": "Helen",
                    "lastName": "Parkinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Peter B.",
                    "lastName": "Rosenthal"
                },
                {
                    "creatorType": "author",
                    "firstName": "Stephan",
                    "lastName": "Saalfeld"
                },
                {
                    "creatorType": "author",
                    "firstName": "Helen R.",
                    "lastName": "Saibil"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sirarat",
                    "lastName": "Sarntivijai"
                },
                {
                    "creatorType": "author",
                    "firstName": "Irene",
                    "lastName": "Solanes Valero"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sriram",
                    "lastName": "Subramaniam"
                },
                {
                    "creatorType": "author",
                    "firstName": "Jason R.",
                    "lastName": "Swedlow"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ilinca",
                    "lastName": "Tudose"
                },
                {
                    "creatorType": "author",
                    "firstName": "Martyn",
                    "lastName": "Winn"
                },
                {
                    "creatorType": "author",
                    "firstName": "Gerard J.",
                    "lastName": "Kleywegt"
                }
            ],
            "abstractNote": "The integration of cellular and molecular structural data is key to understanding the function of macromolecular assemblies and complexes in their in vivo context.  Here we report on the outcomes of a workshop that discussed how to integrate  structural data from a range of public archives. The workshop identified two main  priorities: the development of tools and file formats to support segmentation  (that is, the decomposition of a three-dimensional volume into regions that can  be associated with defined objects), and the development of tools to support the  annotation of biological structures.",
            "publicationTitle": "eLife",
            "publisher": "",
            "place": "England",
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            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "e25835",
            "series": "",
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            "seriesText": "",
            "journalAbbreviation": "Elife",
            "DOI": "10.7554/eLife.25835",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "28682240",
            "PMCID": "PMC5524535",
            "ISSN": "2050-084X",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "*Cell Biology"
                },
                {
                    "tag": "Computational Biology/*methods"
                },
                {
                    "tag": "Data Curation"
                },
                {
                    "tag": "Macromolecular Substances/*metabolism/*ultrastructure"
                },
                {
                    "tag": "biophysics"
                },
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                    "tag": "computational biology"
                },
                {
                    "tag": "electron microscopy"
                },
                {
                    "tag": "emdb"
                },
                {
                    "tag": "empiar"
                },
                {
                    "tag": "none"
                },
                {
                    "tag": "ontology"
                },
                {
                    "tag": "segmentation"
                },
                {
                    "tag": "structural biology"
                },
                {
                    "tag": "systems biology"
                },
                {
                    "tag": "tomography"
                }
            ],
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                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
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    {
        "key": "RBX8W2TY",
        "version": 212702,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
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        },
        "meta": {
            "creatorSummary": "Weston et al.",
            "parsedDate": "2012-01",
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        "data": {
            "key": "RBX8W2TY",
            "version": 212702,
            "itemType": "journalArticle",
            "title": "Causes of abortion on New Zealand dairy farms with a history of abortion associated with Neospora caninum.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "J. F.",
                    "lastName": "Weston"
                },
                {
                    "creatorType": "author",
                    "firstName": "C.",
                    "lastName": "Heuer"
                },
                {
                    "creatorType": "author",
                    "firstName": "T. J.",
                    "lastName": "Parkinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "N. B.",
                    "lastName": "Williamson"
                }
            ],
            "abstractNote": "AIM: To investigate the cause of abortion in cows from farms with a history of abortion associated with Neospora caninum. METHODS: Cows and primiparous heifers  (n = 2,246) that were enrolled in a clinical trial of a vaccine for N. caninum,  and 403 cows and heifers that conceived >6 weeks after the planned start of  mating (PSM), were monitored for abortion on five dairy farms with a history of  abortion associated with N. caninum. When abortion was detected the fetus and/or  placenta were submitted for histopathological examination and maternal paired  sera were collected for the detection of antibodies to N. caninum using the  indirect fluorescent antibody test (IFAT), bovine viral diarrhoea virus (BVDV)  using ELISA, and Leptospira spp. using the microscopic agglutination test (MAT).  RESULTS: At the start of the clinical trial, 189/1,760 (10.7%) of cows and 61/486  (12.6%) of heifers had IFAT titres ≥1:200 for N. caninum. Abortions were detected  in 111 (4.9%) enrolled and 37 (9.2%) non-enrolled cows and heifers. The relative  risk of abortion was 4.21 (95% CI 2.92-6.08) times greater in enrolled animals  that were seropositive to N. caninum than seronegative animals (p < 0.01). Among  all animals, histopathological lesions suggestive of protozoal abortion were seen  in nine, and of bacterial infection in 15, of the 40 cases where the fetus and/or  placenta were recovered. IFAT titres for N. caninum ≥1:1,000 were detected in 66  cows at abortion, including 7/9 cases where there were fetal lesions indicative  of N. caninum infection. In nine cows that aborted, there was evidence of  seroconversion to BVDV and eight cows had MAT titres for Leptospira spp. ≥1:200.  Histopathology revealed dual infectious aetiologies in two cases and, in another  17 cases, there was serological evidence of recent exposure to a second  infectious agent capable of causing abortion in conjunction with N. caninum  lesions in the fetus or fetal bacteraemia. CONCLUSIONS: Multiple infectious  aetiologies occur at herd-level and in individual cows on farms with a history of  abortion associated with N. caninum. A diagnosis of abortion due to N. caninum  infection was made in 9/34 (26.5%) cases where fetal histopathology was  undertaken. CLINICAL RELEVANCE:  Thorough and ongoing diagnostic investigations  should be undertaken in herds with higher than expected abortion losses to  identify all causative agents as control measures could be implemented that may  also reduce the risk of abortion in cows infected with N. caninum.",
            "publicationTitle": "New Zealand veterinary journal",
            "publisher": "",
            "place": "England",
            "date": "2012 Jan",
            "volume": "60",
            "issue": "1",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "27-34",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "N Z Vet J",
            "DOI": "10.1080/00480169.2011.631171",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "22175426",
            "PMCID": "",
            "ISSN": "0048-0169",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "*Dairying"
                },
                {
                    "tag": "*Neospora"
                },
                {
                    "tag": "Abortion, Veterinary/epidemiology/*parasitology/prevention & control"
                },
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Cattle"
                },
                {
                    "tag": "Cattle Diseases/epidemiology/*parasitology/prevention & control"
                },
                {
                    "tag": "Coccidiosis/complications/epidemiology/prevention & control/*veterinary"
                },
                {
                    "tag": "Female"
                },
                {
                    "tag": "New Zealand/epidemiology"
                },
                {
                    "tag": "Pregnancy"
                },
                {
                    "tag": "Protozoan Vaccines/immunology"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
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        "data": {
            "key": "8AQQB4TL",
            "version": 212701,
            "itemType": "journalArticle",
            "title": "Experimental change in temperament: Conversion of the low exploratory phenotype into highly explorative by overexpression of GDNF in the rat striatum.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Jaanus",
                    "lastName": "Harro"
                },
                {
                    "creatorType": "author",
                    "firstName": "Aet",
                    "lastName": "O'Leary"
                },
                {
                    "creatorType": "author",
                    "firstName": "Marianna",
                    "lastName": "Norden"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kristi",
                    "lastName": "Liiver"
                },
                {
                    "creatorType": "author",
                    "firstName": "Margus",
                    "lastName": "Kanarik"
                },
                {
                    "creatorType": "author",
                    "firstName": "J. Arturo",
                    "lastName": "García-Horsman"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sven",
                    "lastName": "Sakson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Pilleriin",
                    "lastName": "Kupper"
                },
                {
                    "creatorType": "author",
                    "firstName": "Karita",
                    "lastName": "Laugus"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sirin",
                    "lastName": "Korulu"
                },
                {
                    "creatorType": "author",
                    "firstName": "Indrek",
                    "lastName": "Teino"
                },
                {
                    "creatorType": "author",
                    "firstName": "Tõnis",
                    "lastName": "Org"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ilmari",
                    "lastName": "Parkkinen"
                },
                {
                    "creatorType": "author",
                    "firstName": "Tanel",
                    "lastName": "Kaart"
                },
                {
                    "creatorType": "author",
                    "firstName": "Päivi",
                    "lastName": "Lindholm"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sophie",
                    "lastName": "Imbeault"
                },
                {
                    "creatorType": "author",
                    "firstName": "Helen",
                    "lastName": "Poska"
                },
                {
                    "creatorType": "author",
                    "firstName": "Brandon K.",
                    "lastName": "Harvey"
                },
                {
                    "creatorType": "author",
                    "firstName": "Mikko",
                    "lastName": "Airavaara"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ruth",
                    "lastName": "Shimmo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Mart",
                    "lastName": "Saarma"
                }
            ],
            "abstractNote": "Major vulnerability factors for psychiatric disorders such as depression, that often prevent complete remission and lead to relapses, are temperamental. In a  rat model of clustered persistent high-anxiety/low-motivation, we have found that  overexpression of glial cell line-derived neurotrophic factor (GDNF) by  intra-striatally administered adeno-associated virus vector completely converts  the passive coping style of low exploratory rats into an active one, similar to  high exploratory rats. This conversion of the behavioural strategy developed  gradually over repeated testing, and was associated with increased catecholamine  metabolism in several brain regions and changes in the regulation of serotonin  neurotransmission. An increase in dopamine transporter availability in the  striatum was necessary for the phenotype conversion. Associated changes in  striatal gene expression included key regulators of monoamine storage and  epitranscriptomic regulation. The increase in GDNF signalling also caused  alterations in levels and regional covariation of oxidative metabolism,  suggestive of a reorganization of neural activity throughout the brain. Thus,  neurotrophic factors, GDNF in particular, may play a pivotal role in the  development, persistence and alteration of temperament/personality traits, and  therefore constitute a potential target for treatment of chronic, relapsing  psychiatric disorders.",
            "publicationTitle": "Molecular psychiatry",
            "publisher": "",
            "place": "England",
            "date": "2026 Jul 10",
            "volume": "",
            "issue": "",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Mol Psychiatry",
            "DOI": "10.1038/s41380-026-03753-7",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "42432013",
            "PMCID": "",
            "ISSN": "1476-5578 1359-4184",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "© 2026. The Author(s).",
            "extra": "",
            "tags": [],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "EH4622CX",
        "version": 212700,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
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            "creatorSummary": "Lo et al.",
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        "data": {
            "key": "EH4622CX",
            "version": 212700,
            "itemType": "journalArticle",
            "title": "Simeprevir Potently Suppresses SARS-CoV-2 Replication and Synergizes with Remdesivir.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Ho Sing",
                    "lastName": "Lo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kenrie Pui Yan",
                    "lastName": "Hui"
                },
                {
                    "creatorType": "author",
                    "firstName": "Hei-Ming",
                    "lastName": "Lai"
                },
                {
                    "creatorType": "author",
                    "firstName": "Xu",
                    "lastName": "He"
                },
                {
                    "creatorType": "author",
                    "firstName": "Khadija Shahed",
                    "lastName": "Khan"
                },
                {
                    "creatorType": "author",
                    "firstName": "Simranjeet",
                    "lastName": "Kaur"
                },
                {
                    "creatorType": "author",
                    "firstName": "Junzhe",
                    "lastName": "Huang"
                },
                {
                    "creatorType": "author",
                    "firstName": "Zhongqi",
                    "lastName": "Li"
                },
                {
                    "creatorType": "author",
                    "firstName": "Anthony K. N.",
                    "lastName": "Chan"
                },
                {
                    "creatorType": "author",
                    "firstName": "Hayley Hei-Yin",
                    "lastName": "Cheung"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ka-Chun",
                    "lastName": "Ng"
                },
                {
                    "creatorType": "author",
                    "firstName": "John Chi Wang",
                    "lastName": "Ho"
                },
                {
                    "creatorType": "author",
                    "firstName": "Yu Wai",
                    "lastName": "Chen"
                },
                {
                    "creatorType": "author",
                    "firstName": "Bowen",
                    "lastName": "Ma"
                },
                {
                    "creatorType": "author",
                    "firstName": "Peter Man-Hin",
                    "lastName": "Cheung"
                },
                {
                    "creatorType": "author",
                    "firstName": "Donghyuk",
                    "lastName": "Shin"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kaidao",
                    "lastName": "Wang"
                },
                {
                    "creatorType": "author",
                    "firstName": "Meng-Hsuan",
                    "lastName": "Lee"
                },
                {
                    "creatorType": "author",
                    "firstName": "Barbara",
                    "lastName": "Selisko"
                },
                {
                    "creatorType": "author",
                    "firstName": "Cecilia",
                    "lastName": "Eydoux"
                },
                {
                    "creatorType": "author",
                    "firstName": "Jean-Claude",
                    "lastName": "Guillemot"
                },
                {
                    "creatorType": "author",
                    "firstName": "Bruno",
                    "lastName": "Canard"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kuen-Phon",
                    "lastName": "Wu"
                },
                {
                    "creatorType": "author",
                    "firstName": "Po-Huang",
                    "lastName": "Liang"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ivan",
                    "lastName": "Dikic"
                },
                {
                    "creatorType": "author",
                    "firstName": "Zhong",
                    "lastName": "Zuo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Francis K. L.",
                    "lastName": "Chan"
                },
                {
                    "creatorType": "author",
                    "firstName": "David S. C.",
                    "lastName": "Hui"
                },
                {
                    "creatorType": "author",
                    "firstName": "Vincent C. T.",
                    "lastName": "Mok"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kam-Bo",
                    "lastName": "Wong"
                },
                {
                    "creatorType": "author",
                    "firstName": "Chris Ka Pun",
                    "lastName": "Mok"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ho",
                    "lastName": "Ko"
                },
                {
                    "creatorType": "author",
                    "firstName": "Wei Shen",
                    "lastName": "Aik"
                },
                {
                    "creatorType": "author",
                    "firstName": "Michael Chi Wai",
                    "lastName": "Chan"
                },
                {
                    "creatorType": "author",
                    "firstName": "Wai-Lung",
                    "lastName": "Ng"
                }
            ],
            "abstractNote": "The outbreak of coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a global threat to human  health. Using a multidisciplinary approach, we identified and validated the  hepatitis C virus (HCV) protease inhibitor simeprevir as an especially promising  repurposable drug for treating COVID-19. Simeprevir potently reduces SARS-CoV-2  viral load by multiple orders of magnitude and synergizes with remdesivir in  vitro. Mechanistically, we showed that simeprevir not only inhibits the main  protease (M(pro)) and unexpectedly the RNA-dependent RNA polymerase (RdRp) but  also modulates host immune responses. Our results thus reveal the possible  anti-SARS-CoV-2 mechanism of simeprevir and highlight the translational potential  of optimizing simeprevir as a therapeutic agent for managing COVID-19 and future  outbreaks of CoV.",
            "publicationTitle": "ACS central science",
            "publisher": "",
            "place": "United States",
            "date": "2021 May 26",
            "volume": "7",
            "issue": "5",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "792-802",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "ACS Cent Sci",
            "DOI": "10.1021/acscentsci.0c01186",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "34075346",
            "PMCID": "PMC8056950",
            "ISSN": "2374-7943 2374-7951",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "© 2021 The Authors. Published by American Chemical Society.",
            "extra": "",
            "tags": [],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "7X8PCZ94",
        "version": 212699,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
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        },
        "meta": {
            "creatorSummary": "Xu et al.",
            "parsedDate": "2020-01",
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        },
        "data": {
            "key": "7X8PCZ94",
            "version": 212699,
            "itemType": "journalArticle",
            "title": "Emerging views of mitophagy in immunity and autoimmune diseases.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Ye",
                    "lastName": "Xu"
                },
                {
                    "creatorType": "author",
                    "firstName": "Jun",
                    "lastName": "Shen"
                },
                {
                    "creatorType": "author",
                    "firstName": "Zhihua",
                    "lastName": "Ran"
                }
            ],
            "abstractNote": "Mitophagy is a vital form of autophagy for selective removal of dysfunctional or redundant mitochondria. Accumulating evidence implicates elimination of  dysfunctional mitochondria as a powerful means employed by autophagy to keep the  immune system in check. The process of mitophagy may restrict inflammatory  cytokine secretion and directly regulate mitochondrial antigen presentation and  immune cell homeostasis. In this review, we describe distinctive pathways of  mammalian mitophagy and highlight recent advances relevant to its function in  immunity. In addition, we further discuss the direct and indirect evidence  linking mitophagy to inflammation and autoimmunity underlying the pathogenesis of  autoimmune diseases including inflammatory bowel diseases (IBD), systemic lupus  erythematosus (SLE) and primary biliary cirrhosis (PBC).Abbreviations: AICD:  activation induced cell death; AIM2: absent in melanoma 2; ALPL/HOPS: alkaline  phosphatase, biomineralization associated; AMA: anti-mitochondrial antibodies;  AMFR: autocrine motility factor receptor; ATG: autophagy-related; BCL2L13: BCL2  like 13; BNIP3: BCL2 interacting protein 3; BNIP3L/NIX: BCL2 interacting protein  3 like; CALCOCO2/NDP52: calcium binding and coiled-coil domain 2; CARD: caspase  recruitment domain containing; CASP1: caspase 1; CD: Crohn disease; CGAS: cyclic  GMP-AMP synthase; CXCL1: C-X-C motif chemokine ligand 1; DEN: diethylnitrosamine;  DLAT/PDC-E2: dihydrolipoamide S-acetyltransferase; DNM1L/Drp1: dynamin 1 like;  ESCRT: endosomal sorting complexes required for transport; FKBP8: FKBP prolyl  isomerase 8; FUNDC1: Fun14 domain containing 1; GABARAP: GABA type A  receptor-associated protein; HMGB1: high mobility group box 1; HPIV3: human  parainfluenza virus type 3; IBD: inflammatory bowel diseases; IEC: intestinal  epithelial cell; IFN: interferon; IL1B/IL-1β: interleukin 1 beta; iNK: invariant  natural killer; IRGM: immunity related GTPase M; LIR: LC3-interacting region;  LPS: lipopolysaccharide; LRRK2: leucine rich repeat kinase 2; MAP1LC3/LC3:  microtubule associated protein 1 light chain 3; MARCH5: membrane associated  ring-CH-type finger 5; MAVS: mitochondrial antiviral signaling protein; MDV:  mitochondria-derived vesicle; MFN1: mitofusin 1; MHC: major histocompatibility  complex; MIF: macrophage migration inhibitory factor; mtAP: mitochondrial antigen  presentation; mtDNA: mitochondrial DNA; MTOR: mechanistic target of rapamycin  kinase; mtROS: mitochondrial ROS; MUL1: mitochondrial E3 ubiquitin protein ligase  1; NBR1: NBR1 autophagy cargo receptor; NFKB/NF-ĸB: nuclear factor kappa B  subunit; NK: natural killer; NLR: NOD-like receptor; NLRC4: NLR family CARD  domain containing 4; NLRP3: NLR family pyrin domain containing 3; OGDH:  oxoglutarate dehydrogenase; OMM: outer mitochondrial membrane; OPTN: optineurin;  ox: oxidized; PARK7: Parkinsonism associated deglycase; PBC: primary biliary  cirrhosis; PEX13: peroxisomal biogenesis factor 13; PHB/PHB1: prohibitin; PHB2:  prohibitin 2; PIK3C3/VPS34: phosphatidylinositol 3-kinase catalytic subunit type  3; PINK1: PTEN induced kinase 1; PLEKHM1: pleckstrin homology and RUN domain  containing M1; PRKN/PARK2: parkin RBR E3 ubiquitin protein ligase; RAB: member  RAS oncogene family; RHEB: Ras homolog: mTORC1 binding; RIPK2: receptor  interacting serine/threonine kinase 2; RLR: DDX58/RIG-I like receptor; ROS:  reactive oxygen species; SBD: small bile ducts; SLC2A1/GLUT1: solute carrier  family 2 member 1; SLE: systemic lupus erythematosus; SMURF1: SMAD specific E3  ubiquitin protein ligase 1; SQSTM1/p62: sequestosome 1; TAX1BP1: Tax1 binding  protein 1; TCR: T cell receptor; TFAM: transcription factor A: mitochondrial;  Th17: T helper 17; TLR9: toll like receptor 9; TMEM173/STING: transmembrane  protein 173; TNF/TNF-α: tumor necrosis factor; Ub: ubiquitin; UC: ulcerative  colitis; ULK1: unc-51 like autophagy activating kinase 1; WIPI: WD repeat domain:  phosphoinositide interacting; ZFYVE1/DFCP1: zinc finger FYVE-type containing 1.",
            "publicationTitle": "Autophagy",
            "publisher": "",
            "place": "United States",
            "date": "2020 Jan",
            "volume": "16",
            "issue": "1",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "3-17",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Autophagy",
            "DOI": "10.1080/15548627.2019.1603547",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "30951392",
            "PMCID": "PMC6984455",
            "ISSN": "1554-8635 1554-8627",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Apoptosis Regulatory Proteins/immunology/*metabolism"
                },
                {
                    "tag": "Autophagy/*immunology"
                },
                {
                    "tag": "DNA, Mitochondrial/immunology/metabolism"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Immune cells"
                },
                {
                    "tag": "Immunity, Innate/*immunology"
                },
                {
                    "tag": "Mitochondria/immunology/*metabolism"
                },
                {
                    "tag": "Prohibitins"
                },
                {
                    "tag": "Reactive Oxygen Species/immunology/*metabolism"
                },
                {
                    "tag": "inflammatory bowel diseases"
                },
                {
                    "tag": "inflammatory cytokines"
                },
                {
                    "tag": "mitophagy"
                },
                {
                    "tag": "primary biliary cirrhosis"
                },
                {
                    "tag": "systemic lupus erythematosus"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "YMRJFZ5T",
        "version": 212698,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
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        "meta": {
            "creatorSummary": "Liszewski et al.",
            "parsedDate": "2000-12-01",
            "numChildren": 0
        },
        "data": {
            "key": "YMRJFZ5T",
            "version": 212698,
            "itemType": "journalArticle",
            "title": "Dissecting sites important for complement regulatory activity in membrane cofactor protein (MCP; CD46).",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "M. K.",
                    "lastName": "Liszewski"
                },
                {
                    "creatorType": "author",
                    "firstName": "M.",
                    "lastName": "Leung"
                },
                {
                    "creatorType": "author",
                    "firstName": "W.",
                    "lastName": "Cui"
                },
                {
                    "creatorType": "author",
                    "firstName": "V. B.",
                    "lastName": "Subramanian"
                },
                {
                    "creatorType": "author",
                    "firstName": "J.",
                    "lastName": "Parkinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "P. N.",
                    "lastName": "Barlow"
                },
                {
                    "creatorType": "author",
                    "firstName": "M.",
                    "lastName": "Manchester"
                },
                {
                    "creatorType": "author",
                    "firstName": "J. P.",
                    "lastName": "Atkinson"
                }
            ],
            "abstractNote": "Membrane cofactor protein (MCP; CD46), a widely distributed regulator of complement activation, is a cofactor for the factor I-mediated degradation of C3b  and C4b deposited on host cells. MCP possesses four extracellular, contiguous  complement control protein modules (CCPs) important for this inhibitory activity.  The goal of the present study was to delineate functional sites within these  modules. We employed multiple approaches including mutagenesis, epitope mapping,  and comparisons to primate MCP to make the following observations. First,  functional sites were located to each of the four CCPs. Second, some residues  were important for both C3b and C4b interactions while others were specific for  one or the other. Third, while a reduction in ligand binding was invariably  accompanied by a parallel reduction in cofactor activity (CA), other mutants lost  or had reduced CA but retained ligand binding. Fourth, two C4b-regulatory domains  overlapped measles virus interactive regions, indicating that the hemagglutinin  docks to a site important for complement inhibition. Fifth, several MCP  regulatory areas corresponded to functionally critical, homologous positions in  other CCP-bearing C3b/C4b-binding proteins. Based on these data and the recently  derived crystal structure of repeats one and two, computer modeling was employed  to predict MCP structure and examine active sites.",
            "publicationTitle": "The Journal of biological chemistry",
            "publisher": "",
            "place": "United States",
            "date": "2000 Dec 1",
            "volume": "275",
            "issue": "48",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "37692-37701",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "J Biol Chem",
            "DOI": "10.1074/jbc.M004650200",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "10960475",
            "PMCID": "",
            "ISSN": "0021-9258",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "Amino Acid Sequence"
                },
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Antibodies, Monoclonal/immunology"
                },
                {
                    "tag": "Antigens, CD/chemistry/genetics/immunology/*metabolism"
                },
                {
                    "tag": "Binding Sites"
                },
                {
                    "tag": "CHO Cells"
                },
                {
                    "tag": "Cricetinae"
                },
                {
                    "tag": "Epitope Mapping"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Membrane Cofactor Protein"
                },
                {
                    "tag": "Membrane Glycoproteins/chemistry/genetics/immunology/*metabolism"
                },
                {
                    "tag": "Models, Molecular"
                },
                {
                    "tag": "Molecular Sequence Data"
                },
                {
                    "tag": "Mutagenesis, Site-Directed"
                },
                {
                    "tag": "Peptide Fragments/chemistry/metabolism"
                },
                {
                    "tag": "Protein Conformation"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
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        "version": 212697,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
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        "meta": {
            "creatorSummary": "Deloncle et al.",
            "parsedDate": "2017-01",
            "numChildren": 0
        },
        "data": {
            "key": "CBKNJICG",
            "version": 212697,
            "itemType": "journalArticle",
            "title": "Copper brain protein protection against free radical-induced neuronal death: Survival ratio in SH-SY5Y neuroblastoma cell cultures.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Roger",
                    "lastName": "Deloncle"
                },
                {
                    "creatorType": "author",
                    "firstName": "Bernard",
                    "lastName": "Fauconneau"
                },
                {
                    "creatorType": "author",
                    "firstName": "Olivier",
                    "lastName": "Guillard"
                },
                {
                    "creatorType": "author",
                    "firstName": "José",
                    "lastName": "Delaval"
                },
                {
                    "creatorType": "author",
                    "firstName": "Gérard",
                    "lastName": "Lesage"
                },
                {
                    "creatorType": "author",
                    "firstName": "Alain",
                    "lastName": "Pineau"
                }
            ],
            "abstractNote": "In Creutzfeldt Jakob, Alzheimer and Parkinson diseases, copper metalloproteins such as prion, amyloid protein precursor and α-synuclein are able to protect  against free radicals by reduction from cupric Cu(+2) to cupreous Cu(+). In these  pathologies, a regional copper (Cu) brain decrease correlated with an iron, zinc  or manganese (Mn) increase has previously been observed, leading to local  neuronal death and abnormal deposition of these metalloproteins in β-sheet  structures. In this study we demonstrate the protective effect of Cu  metalloproteins against deleterious free-radical effects. With neuroblastoma  SH-SY5Y cell cultures, we show that bovine brain prion protein in Cu but not Mn  form prevents free radical-induced neuronal death. The survival ratio of SH-SY5Y  cells has been measured after UV irradiation (free radical production), when the  incubating medium is supplemented with bovine brain homogenate in native, Cu or  Mn forms. This ratio, about 28% without any addition or with bovine brain protein  added in Mn form, increases by as much as 54.73% with addition to the culture  medium of native bovine brain protein and by as much as 95.95% if the addition is  carried out in cupric form. This protective effect of brain copper protein  against free radical-induced neuronal death has been confirmed with Inductively  Coupled Plasma Mass Spectrometry Mn and Cu measurement in bovine brain  homogenates: respectively lower than detection limit and 9.01μg/g dry weight for  native form; lower than detection limit and 825.85μg/g dry weight for  Cu-supplemented form and 1.75 and 68.1μg/g dry weight in Mn-supplemented brain  homogenate.",
            "publicationTitle": "Journal of trace elements in medicine and biology : organ of the Society for Minerals and Trace Elements (GMS)",
            "publisher": "",
            "place": "Germany",
            "date": "2017 Jan",
            "volume": "39",
            "issue": "",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "50-53",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "J Trace Elem Med Biol",
            "DOI": "10.1016/j.jtemb.2016.07.006",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "27908423",
            "PMCID": "",
            "ISSN": "1878-3252 0946-672X",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "Copyright © 2016 Elsevier GmbH. All rights reserved.",
            "extra": "",
            "tags": [
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Cattle"
                },
                {
                    "tag": "Cell Death/drug effects"
                },
                {
                    "tag": "Cell Survival/drug effects"
                },
                {
                    "tag": "Copper"
                },
                {
                    "tag": "Copper/*metabolism/pharmacology"
                },
                {
                    "tag": "Free Radicals/antagonists & inhibitors/chemistry/pharmacology"
                },
                {
                    "tag": "Free radicals"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Inductively Coupled Plasma Mass Spectrometry (ICP-MS)"
                },
                {
                    "tag": "Manganese"
                },
                {
                    "tag": "Manganese/metabolism/pharmacology"
                },
                {
                    "tag": "Neuroblastoma/*pathology"
                },
                {
                    "tag": "Neuronal death"
                },
                {
                    "tag": "Neurons/*drug effects/*pathology"
                },
                {
                    "tag": "Prion Proteins/*chemistry/*metabolism/pharmacology"
                },
                {
                    "tag": "SH-SY5Y cells"
                },
                {
                    "tag": "Tumor Cells, Cultured"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "4B5RL6CE",
        "version": 212696,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
            "links": {
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        },
        "meta": {
            "creatorSummary": "Miyazaki et al.",
            "parsedDate": "1998-07",
            "numChildren": 0
        },
        "data": {
            "key": "4B5RL6CE",
            "version": 212696,
            "itemType": "journalArticle",
            "title": "Fluconazole resistance associated with drug efflux and increased transcription of a drug transporter gene, PDH1, in Candida glabrata.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "H.",
                    "lastName": "Miyazaki"
                },
                {
                    "creatorType": "author",
                    "firstName": "Y.",
                    "lastName": "Miyazaki"
                },
                {
                    "creatorType": "author",
                    "firstName": "A.",
                    "lastName": "Geber"
                },
                {
                    "creatorType": "author",
                    "firstName": "T.",
                    "lastName": "Parkinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "C.",
                    "lastName": "Hitchcock"
                },
                {
                    "creatorType": "author",
                    "firstName": "D. J.",
                    "lastName": "Falconer"
                },
                {
                    "creatorType": "author",
                    "firstName": "D. J.",
                    "lastName": "Ward"
                },
                {
                    "creatorType": "author",
                    "firstName": "K.",
                    "lastName": "Marsden"
                },
                {
                    "creatorType": "author",
                    "firstName": "J. E.",
                    "lastName": "Bennett"
                }
            ],
            "abstractNote": "Sequential Candida glabrata isolates were obtained from the mouth of a patient infected with human immunodeficiency virus type 1 who was receiving high doses of  fluconazole for oropharyngeal thrush. Fluconazole-susceptible colonies were  replaced by resistant colonies that exhibited both increased fluconazole efflux  and increased transcripts of a gene which codes for a protein with 72.5% identity  to Pdr5p, an ABC multidrug transporter in Saccharomyces cerevisiae. The deduced  protein had a molecular mass of 175 kDa and was composed of two homologous  halves, each with six putative transmembrane domains and highly conserved  sequences of ATP-binding domains. When the earliest and most azole-susceptible  isolate of C. glabrata from this patient was exposed to fluconazole, increased  transcripts of the PDR5 homolog appeared, linking azole exposure to regulation of  this gene.",
            "publicationTitle": "Antimicrobial agents and chemotherapy",
            "publisher": "",
            "place": "United States",
            "date": "1998 Jul",
            "volume": "42",
            "issue": "7",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "1695-1701",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Antimicrob Agents Chemother",
            "DOI": "10.1128/AAC.42.7.1695",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "9661006",
            "PMCID": "PMC105668",
            "ISSN": "0066-4804 1098-6596",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "*Fungal Proteins"
                },
                {
                    "tag": "*Saccharomyces cerevisiae Proteins"
                },
                {
                    "tag": "AIDS-Related Opportunistic Infections/drug therapy/microbiology"
                },
                {
                    "tag": "Amino Acid Sequence"
                },
                {
                    "tag": "Antifungal Agents/*pharmacology"
                },
                {
                    "tag": "Biological Transport"
                },
                {
                    "tag": "Blotting, Northern"
                },
                {
                    "tag": "Blotting, Southern"
                },
                {
                    "tag": "Candida/drug effects/*genetics"
                },
                {
                    "tag": "Candidiasis/complications/microbiology"
                },
                {
                    "tag": "Drug Resistance, Microbial/genetics"
                },
                {
                    "tag": "Fluconazole/*pharmacology"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Male"
                },
                {
                    "tag": "Membrane Proteins/*genetics/physiology"
                },
                {
                    "tag": "Middle Aged"
                },
                {
                    "tag": "Molecular Sequence Data"
                },
                {
                    "tag": "Sequence Homology, Amino Acid"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "FUEFU2YF",
        "version": 212695,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
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        "meta": {
            "creatorSummary": "Tuomanen et al.",
            "parsedDate": "1988-07",
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        },
        "data": {
            "key": "FUEFU2YF",
            "version": 212695,
            "itemType": "journalArticle",
            "title": "Microbiological and clinical significance of a new property of defective lysis in clinical strains of pneumococci.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "E.",
                    "lastName": "Tuomanen"
                },
                {
                    "creatorType": "author",
                    "firstName": "H.",
                    "lastName": "Pollack"
                },
                {
                    "creatorType": "author",
                    "firstName": "A.",
                    "lastName": "Parkinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "M.",
                    "lastName": "Davidson"
                },
                {
                    "creatorType": "author",
                    "firstName": "R.",
                    "lastName": "Facklam"
                },
                {
                    "creatorType": "author",
                    "firstName": "R.",
                    "lastName": "Rich"
                },
                {
                    "creatorType": "author",
                    "firstName": "O.",
                    "lastName": "Zak"
                }
            ],
            "abstractNote": "A pneumococcal isolate that caused relapsing meningitis in a patient infected with human immunodeficiency virus (HIV) was found to display an unusual response  to penicillin--rapid death but a striking lack of cellular lysis. This lytic  defect was also detected in all four pneumococcal isolates from three additional  HIV-infected patients and in more than half of the clinical isolates from  patients with bacteremia. In a rabbit model of meningitis, the lysis-defective  strain remained cryptic, with a delay of 5 h in the onset of leukocytosis in  cerebrospinal fluid. A marked burst of leukocytosis was associated with  ampicillin-induced lysis of a lysis-sensitive strain but not of a lysis-defective  strain. Pneumococcal clinical isolates have different lytic responses to  penicillin; defective lysis may adversely affect the course of meningitis, an  observation suggesting that autolysins play a role in modulating infectious  diseases.",
            "publicationTitle": "The Journal of infectious diseases",
            "publisher": "",
            "place": "United States",
            "date": "1988 Jul",
            "volume": "158",
            "issue": "1",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "36-43",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "J Infect Dis",
            "DOI": "10.1093/infdis/158.1.36",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "3392419",
            "PMCID": "",
            "ISSN": "0022-1899",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "Acquired Immunodeficiency Syndrome/complications"
                },
                {
                    "tag": "Adult"
                },
                {
                    "tag": "Ampicillin/pharmacology"
                },
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Bacteriolysis/*drug effects"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Meningitis, Pneumococcal/cerebrospinal fluid/complications/*microbiology"
                },
                {
                    "tag": "Penicillin Resistance"
                },
                {
                    "tag": "Penicillins/*pharmacology"
                },
                {
                    "tag": "Rabbits"
                },
                {
                    "tag": "Sepsis/microbiology"
                },
                {
                    "tag": "Streptococcus pneumoniae/*drug effects/isolation & purification"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
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            "itemType": "journalArticle",
            "title": "Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus.",
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                    "creatorType": "author",
                    "firstName": "Ujjwal",
                    "lastName": "Maulik"
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                    "lastName": "Sen"
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                    "firstName": "Saurav",
                    "lastName": "Mallik"
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                    "lastName": "Bandyopadhyay"
                }
            ],
            "abstractNote": "BACKGROUND: Study of epigenetics is currently a high-impact research topic. Multi stage methylation is also an area of high-dimensional prospect. In this article,  we provide a new study (intra and inter-species study) on brain tissue between  human and rhesus on two methylation cytosine variants based data-profiles (viz.,  5-hydroxymethylcytosine (5hmC) and 5-methylcytosine (5mC) samples) through  TF-miRNA-gene network based module detection. RESULTS: First of all, we determine  differentially 5hmC methylated genes for human as well as rhesus for  intra-species analysis, and differentially multi-stage methylated genes for  inter-species analysis. Thereafter, we utilize weighted topological overlap  matrix (TOM) measure and average linkage clustering consecutively on these  genesets for intra- and inter-species study.We identify co-methylated and  multi-stage co-methylated gene modules by using dynamic tree cut, for intra-and  inter-species cases, respectively. Each module is represented by individual color  in the dendrogram. Gene Ontology and KEGG pathway based analysis are then  performed to identify biological functionalities of the identified modules.  Finally, top ten regulator TFs and targeter miRNAs that are associated with the  maximum number of gene modules, are determined for both intra-and inter-species  analysis. CONCLUSIONS: The novel TFs and miRNAs obtained from the analysis are:  MYST3 and ZNF771 as TFs (for human intra-species analysis), BAZ2B, RCOR3 and ATF1  as TFs (for rhesus intra-species analysis), and mml-miR-768-3p and mml-miR-561 as  miRs (for rhesus intra-species analysis); and MYST3 and ZNF771 as miRs(for  inter-species study). Furthermore, the genes/TFs/miRNAs that are already found to  be liable for several brain-related dreadful diseases as well as rare neglected  diseases (e.g., wolf Hirschhorn syndrome, Joubarts Syndrome, Huntington's  disease, Simian Immunodeficiency Virus(SIV) mediated enchaphilits, Parkinsons  Disease, Bipolar disorder and Schizophenia etc.) are mentioned.",
            "publicationTitle": "BMC genetics",
            "publisher": "",
            "place": "England",
            "date": "2018 Jan 22",
            "volume": "19",
            "issue": "1",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "9",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "BMC Genet",
            "DOI": "10.1186/s12863-017-0574-7",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "29357837",
            "PMCID": "PMC5776763",
            "ISSN": "1471-2156",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "*DNA Methylation"
                },
                {
                    "tag": "*Gene Regulatory Networks"
                },
                {
                    "tag": "5-Methylcytosine/*analogs & derivatives/*analysis"
                },
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Brain/*metabolism"
                },
                {
                    "tag": "Differentially 5hmC-methylated genes"
                },
                {
                    "tag": "Differentially multi-stage methylated genes"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Inter-species multi-stage co-methylated gene-modules"
                },
                {
                    "tag": "Intra-species co-methylated gene-modules"
                },
                {
                    "tag": "Macaca mulatta/*genetics"
                },
                {
                    "tag": "Multiple cytosine variants"
                },
                {
                    "tag": "Species Specificity"
                },
                {
                    "tag": "Top regulator transcription factors"
                },
                {
                    "tag": "Top targeter miRNAs"
                },
                {
                    "tag": "Weighted TOM and dynamic tree cut"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "LAMHESSN",
        "version": 212693,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/foxsayswhat",
                    "type": "text/html"
                }
            }
        },
        "links": {
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                "href": "https://api.zotero.org/users/6212901/items/LAMHESSN",
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            "alternate": {
                "href": "https://www.zotero.org/foxsayswhat/items/LAMHESSN",
                "type": "text/html"
            }
        },
        "meta": {
            "creatorSummary": "Huber et al.",
            "parsedDate": "2007",
            "numChildren": 0
        },
        "data": {
            "key": "LAMHESSN",
            "version": 212693,
            "itemType": "journalArticle",
            "title": "Delusional parasitosis and the dopamine transporter. A new insight of etiology?",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "M.",
                    "lastName": "Huber"
                },
                {
                    "creatorType": "author",
                    "firstName": "E.",
                    "lastName": "Kirchler"
                },
                {
                    "creatorType": "author",
                    "firstName": "M.",
                    "lastName": "Karner"
                },
                {
                    "creatorType": "author",
                    "firstName": "R.",
                    "lastName": "Pycha"
                }
            ],
            "abstractNote": "Delusional parasitosis (DP) is a psychotic condition in which a person has the unshakeable and mistaken belief (delusion) and/or aberrant perception  (hallucination) of being infested with parasites. The disorder will be usually  classified in a primary DP-group without a detectable cause (so-called pure  forms), while secondary DP-groups are associated with general organic conditions,  psychiatric illnesses and drugs (substance induced). Etiology and pathophysiology  of DP remain however unknown. In the present paper we hypothesize for the first  time a decreased striatal dopamine transporter (DAT)-functioning (corresponding  with an increased extracellular dopamine-level) as etiologic condition for DP  (primary and secondary groups). The DAT as key regulator of the dopamine-reuptake  in the human brain is well known (regulation of the extracellular dopamine  concentration). It is a presynaptic plasma membrane protein highly dense  represented in the striatum. The hypothesis of a decreased DAT-functioning as  etiologic condition by DP is revealed in case reports which show that  DAT-inhibitors, such as cocaine, pemoline, methylphenidate and other  amphetamine-derivatives can induce the clinical expression of DP. Several other  associated causes of secondary DP-groups (medications, parkinson, chorea  huntington, multiple system atrophy, diabetes, cerebrovascular diseases,  alcoholism, traumatic brain injury, hyperuricemia, human immunodeficiency virus,  iron deficiency, schizophrenia, depression) suggest that the clinical expression  of DP may be related to a decreased striatal DAT-functioning (blocking, reduced  ligand binding, reduced density, reduced activity). Our examined DP-cases  (2-females) show means of magnetic resonance imaging a structurally damaged  striatum. Furthermore, we presume that by the primary DP-group, the  physiologically age-related decline of the DAT-density is pathologically  elevated. Based on this hypothesis we show in the present paper the relation  between DP and decreased striatal DAT-functioning, trying to give a new insight  into the pathophysiologically mechanism involved. The hypothesis provides  supporting evidence that increased levels of extracellular dopamine in the  striatum of DP-patients is likely to be the result of decreased DAT-functioning  and not increased rates of release. The hypothesis can be investigated simply by  dopamine transporter imaging in patients with DP.",
            "publicationTitle": "Medical hypotheses",
            "publisher": "",
            "place": "United States",
            "date": "2007",
            "volume": "68",
            "issue": "6",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "1351-1358",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Med Hypotheses",
            "DOI": "10.1016/j.mehy.2006.07.061",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "17134847",
            "PMCID": "",
            "ISSN": "0306-9877",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "*Models, Psychological"
                },
                {
                    "tag": "Cocaine/pharmacology"
                },
                {
                    "tag": "Corpus Striatum/metabolism"
                },
                {
                    "tag": "Delusions/*etiology/physiopathology/*psychology"
                },
                {
                    "tag": "Dopamine Plasma Membrane Transport Proteins/antagonists & inhibitors/*metabolism"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Methylphenidate/pharmacology"
                },
                {
                    "tag": "Parasitic Diseases/*psychology"
                },
                {
                    "tag": "Pemoline/pharmacology"
                },
                {
                    "tag": "Protein Binding"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "V8TREV8K",
        "version": 212692,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
            "links": {
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            }
        },
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                "type": "text/html"
            }
        },
        "meta": {
            "creatorSummary": "Djukanovic et al.",
            "parsedDate": "2018-11",
            "numChildren": 0
        },
        "data": {
            "key": "V8TREV8K",
            "version": 212692,
            "itemType": "journalArticle",
            "title": "The Severe Heterogeneous Asthma Research collaboration, Patient-centred (SHARP) ERS Clinical Research Collaboration: a new dawn in asthma research.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Ratko",
                    "lastName": "Djukanovic"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ian M.",
                    "lastName": "Adcock"
                },
                {
                    "creatorType": "author",
                    "firstName": "Gary",
                    "lastName": "Anderson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Elisabeth H.",
                    "lastName": "Bel"
                },
                {
                    "creatorType": "author",
                    "firstName": "Giorgio W.",
                    "lastName": "Canonica"
                },
                {
                    "creatorType": "author",
                    "firstName": "Hui",
                    "lastName": "Cao"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kian Fan",
                    "lastName": "Chung"
                },
                {
                    "creatorType": "author",
                    "firstName": "Donna E.",
                    "lastName": "Davies"
                },
                {
                    "creatorType": "author",
                    "firstName": "Céline",
                    "lastName": "Genton"
                },
                {
                    "creatorType": "author",
                    "firstName": "Toni",
                    "lastName": "Gibson-Latimer"
                },
                {
                    "creatorType": "author",
                    "firstName": "Dominique",
                    "lastName": "Hamerlijnck"
                },
                {
                    "creatorType": "author",
                    "firstName": "Elise",
                    "lastName": "Heuvelin"
                },
                {
                    "creatorType": "author",
                    "firstName": "Renaud",
                    "lastName": "Louis"
                },
                {
                    "creatorType": "author",
                    "firstName": "Stephanie",
                    "lastName": "Korn"
                },
                {
                    "creatorType": "author",
                    "firstName": "Maxim",
                    "lastName": "Kots"
                },
                {
                    "creatorType": "author",
                    "firstName": "Namhee",
                    "lastName": "Kwon"
                },
                {
                    "creatorType": "author",
                    "firstName": "Riad",
                    "lastName": "Naddaf"
                },
                {
                    "creatorType": "author",
                    "firstName": "Scott S.",
                    "lastName": "Wagers"
                }
            ],
            "abstractNote": "",
            "publicationTitle": "The European respiratory journal",
            "publisher": "",
            "place": "England",
            "date": "2018 Nov",
            "volume": "52",
            "issue": "5",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "1801671",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Eur Respir J",
            "DOI": "10.1183/13993003.01671-2018",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "30498052",
            "PMCID": "",
            "ISSN": "1399-3003 0903-1936",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "*Patient Outcome Assessment"
                },
                {
                    "tag": "*Patient-Centered Care"
                },
                {
                    "tag": "Asthma/*therapy"
                },
                {
                    "tag": "Biomedical Research/*trends"
                },
                {
                    "tag": "Europe"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Intersectoral Collaboration"
                },
                {
                    "tag": "Societies, Medical"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "YDVFN6JY",
        "version": 212691,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/foxsayswhat",
                    "type": "text/html"
                }
            }
        },
        "links": {
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                "href": "https://api.zotero.org/users/6212901/items/YDVFN6JY",
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            },
            "alternate": {
                "href": "https://www.zotero.org/foxsayswhat/items/YDVFN6JY",
                "type": "text/html"
            }
        },
        "meta": {
            "creatorSummary": "Morrissey et al.",
            "parsedDate": "1980-10",
            "numChildren": 0
        },
        "data": {
            "key": "YDVFN6JY",
            "version": 212691,
            "itemType": "journalArticle",
            "title": "Immunologic abnormalities in HRS/J mice. I. Specific deficit in T lymphocyte helper function in a mutant mouse.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "P. J.",
                    "lastName": "Morrissey"
                },
                {
                    "creatorType": "author",
                    "firstName": "D. R.",
                    "lastName": "Parkinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "R. S.",
                    "lastName": "Schwartz"
                },
                {
                    "creatorType": "author",
                    "firstName": "S. D.",
                    "lastName": "Waksal"
                }
            ],
            "abstractNote": "An immunologic analysis of mutants HRS/J mice was done comparing hr/hr homozygotes to hr/+ heterozygotes. It was shown that hr/hr spleen but not lymph  node cells show a defect specific for functions associated with T helper cells as  compared to hr/+ littermates. This defect, which is expressed by depressed  proliferative responses to alloantigens, does not affect the ability of hr/hr  spleen cells to respond normally to T cell mitogens nor does it affect their  ability to generate normal cytotoxic effector cells in vitro. It is further  suggested that this defect is due to an abnormality in thymus epithelium, which  is also related to the high grade expression of xenotropic virus in old hr/hr  thymocytes and subsequent development of leukemia.",
            "publicationTitle": "Journal of immunology (Baltimore, Md. : 1950)",
            "publisher": "",
            "place": "England",
            "date": "1980 Oct",
            "volume": "125",
            "issue": "4",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "1558-1562",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "J Immunol",
            "DOI": "",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "6447727",
            "PMCID": "",
            "ISSN": "0022-1767",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "*Mutation"
                },
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Female"
                },
                {
                    "tag": "Heterozygote"
                },
                {
                    "tag": "Homozygote"
                },
                {
                    "tag": "Isoantigens"
                },
                {
                    "tag": "Lymph Nodes/immunology"
                },
                {
                    "tag": "Lymphocyte Culture Test, Mixed"
                },
                {
                    "tag": "Mice"
                },
                {
                    "tag": "Mice, Inbred A"
                },
                {
                    "tag": "Mice, Inbred C57BL"
                },
                {
                    "tag": "Mitogens/pharmacology"
                },
                {
                    "tag": "Spleen/immunology"
                },
                {
                    "tag": "T-Lymphocytes/*immunology"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "FXI9KNDP",
        "version": 212690,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
            "links": {
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                    "href": "https://www.zotero.org/foxsayswhat",
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            }
        },
        "meta": {
            "creatorSummary": "Clark et al.",
            "parsedDate": "2023-10",
            "numChildren": 0
        },
        "data": {
            "key": "FXI9KNDP",
            "version": 212690,
            "itemType": "journalArticle",
            "title": "Anatomy of an agricultural antagonist: Feeding complex structure and function of three xylem sap-feeding insects illuminated with synchrotron-based 3D imaging.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Elizabeth G.",
                    "lastName": "Clark"
                },
                {
                    "creatorType": "author",
                    "firstName": "Daniele",
                    "lastName": "Cornara"
                },
                {
                    "creatorType": "author",
                    "firstName": "Craig R.",
                    "lastName": "Brodersen"
                },
                {
                    "creatorType": "author",
                    "firstName": "Andrew J.",
                    "lastName": "McElrone"
                },
                {
                    "creatorType": "author",
                    "firstName": "Dilworth Y.",
                    "lastName": "Parkinson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Rodrigo P. P.",
                    "lastName": "Almeida"
                }
            ],
            "abstractNote": "Many insects feed on xylem or phloem sap of vascular plants. Although physical damage to the plant is minimal, the process of insect feeding can transmit lethal  viruses and bacterial pathogens. Disparities between insect-mediated pathogen  transmission efficiency have been identified among xylem sap-feeding insects;  however, the mechanistic drivers of these trends are unclear. Identifying and  understanding the structural factors and associated integrated functional  components that may ultimately determine these disparities are critical for  managing plant diseases. Here, we applied synchrotron-based X-ray microcomputed  tomography to digitally reconstruct the morphology of three xylem sap-feeding  insect vectors of plant pathogens: Graphocephala atropunctata (blue-green  sharpshooter; Hemiptera, Cicadellidae) and Homalodisca vitripennis (glassy-winged  sharpshooter; Hemiptera, Cicadellidae), and the spittlebug Philaenus spumarius  (meadow spittlebug; Hemiptera, Aphrophoridae). The application of this technique  revealed previously undescribed anatomical features of these organisms, such as  key components of the salivary complex. The visualization of the 3D structure of  the precibarial valve led to new insights into the mechanism of how this  structure functions. Morphological disparities with functional implications  between taxa were highlighted as well, including the morphology and volume of the  cibarial dilator musculature responsible for extracting xylem sap, which has  implications for force application capabilities. These morphological insights  will be used to target analyses illuminating functional differences in feeding  behavior.",
            "publicationTitle": "Journal of morphology",
            "publisher": "",
            "place": "United States",
            "date": "2023 Oct",
            "volume": "284",
            "issue": "10",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "e21639",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "J Morphol",
            "DOI": "10.1002/jmor.21639",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "37708508",
            "PMCID": "",
            "ISSN": "1097-4687 0022-2887",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "© 2023 The Authors. Journal of Morphology published by Wiley Periodicals LLC.",
            "extra": "",
            "tags": [
                {
                    "tag": "*Imaging, Three-Dimensional"
                },
                {
                    "tag": "*Synchrotrons"
                },
                {
                    "tag": "3D imaging"
                },
                {
                    "tag": "Animals"
                },
                {
                    "tag": "Auchenorryncha"
                },
                {
                    "tag": "Feeding Behavior"
                },
                {
                    "tag": "Insecta"
                },
                {
                    "tag": "X-Ray Microtomography"
                },
                {
                    "tag": "functional morphology"
                },
                {
                    "tag": "vectors of plant pathogens"
                },
                {
                    "tag": "xylem sap-feeding insects"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "6SEQUJ75",
        "version": 212689,
        "library": {
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            "id": 6212901,
            "name": "Nick Petosky",
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        },
        "meta": {
            "creatorSummary": "Jeyaruban et al.",
            "parsedDate": "2026-09-17",
            "numChildren": 0
        },
        "data": {
            "key": "6SEQUJ75",
            "version": 212689,
            "itemType": "journalArticle",
            "title": "No association between Epstein-Barr Virus serostatus and infection-related mortality in 9,429 British adults: a UK Biobank study.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Piranavi",
                    "lastName": "Jeyaruban"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sheena",
                    "lastName": "Waters"
                },
                {
                    "creatorType": "author",
                    "firstName": "Emily",
                    "lastName": "Tregaskis-Daniels"
                },
                {
                    "creatorType": "author",
                    "firstName": "Francesca",
                    "lastName": "Rios"
                },
                {
                    "creatorType": "author",
                    "firstName": "Louisa",
                    "lastName": "James"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ruth",
                    "lastName": "Dobson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Gavin",
                    "lastName": "Giovannoni"
                },
                {
                    "creatorType": "author",
                    "firstName": "Benjamin M.",
                    "lastName": "Jacobs"
                }
            ],
            "abstractNote": "OBJECTIVES: Epstein Barr Virus (EBV) is a necessary but not sufficient antecedent to the development of Multiple Sclerosis (MS). This observation has prompted  interest in generating a sterilising EBV vaccine to reduce MS incidence. EBV is  highly prevalent worldwide, establishing lifelong latency within B cells, and  promoting their survival. This has raised concerns that administering EBV  vaccines to the general population might have a detrimental impact on humoral  immunity. We therefore hypothesised that EBV serostatus is associated with  infection-related mortality. METHODS: The study population was derived from the  UK Biobank (UKB), a longitudinal cohort study consisting of ∼ 500,000  participants. We leveraged serological data, available in a subset of UKB  participants, to define EBV serostatus. A Cox proportional hazards model was used  to investigate whether EBV serostatus influenced infection-related mortality. The  primary analysis model adjusted for age, sex and Townsend deprivation index.  Using linked death registry data, we defined infection-related mortality based on  the International Classification of Diseases, Tenth Revision (ICD10) list for  primary and contributory cause of death. In sensitivity analyses we accounted for  the impact of smoking and body mass index, considered a matched cohort,  considered EBV antibody titres as continuous exposures, and considered a more  stringent definition for EBV seronegativity. RESULTS: We discovered no evidence  of association between EBV seropositivity and infection-related mortality  (HR = 1.6, 95% CI = 0.65-3.91, p = 0.30). The absence of association was not  materially altered when additionally adjusting for smoking and BMI, modelling EBV  serostatus with quantitative antibody levels, conducting a matched cohort  analysis, or using a stricter definition for EBV seronegativity. CONCLUSION: Our  findings indicate that EBV serostatus is not associated with infection-related  mortality in a large, UK population-based cohort of older adults.",
            "publicationTitle": "Multiple sclerosis and related disorders",
            "publisher": "",
            "place": "Netherlands",
            "date": "2026 Sep 17",
            "volume": "115",
            "issue": "",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "107925",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Mult Scler Relat Disord",
            "DOI": "10.1016/j.msard.2026.107925",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "42763970",
            "PMCID": "",
            "ISSN": "2211-0356 2211-0348",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "Copyright © 2026 The Author(s). Published by Elsevier B.V. All rights reserved.",
            "extra": "",
            "tags": [
                {
                    "tag": "Epidemiology"
                },
                {
                    "tag": "Epstein-Barr virus"
                },
                {
                    "tag": "Multiple Sclerosis"
                },
                {
                    "tag": "Prevention"
                },
                {
                    "tag": "Vaccine"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "J87N7G9B",
        "version": 212688,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
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        },
        "meta": {
            "creatorSummary": "Onyenobi et al.",
            "parsedDate": "2025-06",
            "numChildren": 0
        },
        "data": {
            "key": "J87N7G9B",
            "version": 212688,
            "itemType": "journalArticle",
            "title": "Development and Validation of Polygenic Risk Scores for Blood Pressure Traits in Continental African Populations.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Ebuka",
                    "lastName": "Onyenobi"
                },
                {
                    "creatorType": "author",
                    "firstName": "Michael",
                    "lastName": "Zhong"
                },
                {
                    "creatorType": "author",
                    "firstName": "Opeyemi",
                    "lastName": "Soremekun"
                },
                {
                    "creatorType": "author",
                    "firstName": "Abram",
                    "lastName": "Kamiza"
                },
                {
                    "creatorType": "author",
                    "firstName": "Romuald",
                    "lastName": "Boua"
                },
                {
                    "creatorType": "author",
                    "firstName": "Tinashe",
                    "lastName": "Chikowore"
                },
                {
                    "creatorType": "author",
                    "firstName": "Segun",
                    "lastName": "Fatumo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ananyo",
                    "lastName": "Choudhury"
                },
                {
                    "creatorType": "author",
                    "firstName": "Scott",
                    "lastName": "Hazelhurst"
                },
                {
                    "creatorType": "author",
                    "firstName": "Clement",
                    "lastName": "Adebamowo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Michèle",
                    "lastName": "Ramsay"
                },
                {
                    "creatorType": "author",
                    "firstName": "Bamidele",
                    "lastName": "Tayo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Jennifer S.",
                    "lastName": "Albrecht"
                },
                {
                    "creatorType": "author",
                    "firstName": "Timothy D.",
                    "lastName": "O'Connor"
                },
                {
                    "creatorType": "author",
                    "firstName": "Yuji",
                    "lastName": "Zhang"
                },
                {
                    "creatorType": "author",
                    "firstName": "Braxton D.",
                    "lastName": "Mitchell"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sally N.",
                    "lastName": "Adebamowo"
                }
            ],
            "abstractNote": "BACKGROUND: Most polygenic risk scores (PRS) have been developed in European populations, frequently leading to limited transferability across diverse  ancestry populations. This study aimed to develop and evaluate PRS for blood  pressure (BP) traits in continental African populations and investigate how  African genetic diversity influences PRS performance. METHODS: We generated PRS  for systolic BP, diastolic BP, pulse pressure, and hypertension. We used a  pan-African cohort as the target population and compared single-ancestry and  multi-ancestry PRS methods. We compared the performance of African  ancestry-derived PRS against multi-ancestry PRS on the entire data set and within  South, East, and West African subpopulations. RESULTS: Multi-ancestry PRS  demonstrated significantly higher predictive accuracy compared with  single-ancestry PRS models. PRS predictive accuracy varied across different  African regions, with the highest performance observed in East Africa. In the  combined population, the difference in mean BP values between the first  multi-ancestry PRS quartile and the top quartile was 6.53 (95% CI, 5.3-7.74),  3.81 (95% CI, 3.9-4.52), and 3.59 (95% CI, 2.4-4.32) mm Hg for systolic BP,  diastolic BP, and pulse pressure, respectively. Individuals in the highest PRS  risk quartile had odds of hypertension that were 1.47 (95% CI, 1.7-1.69) times  greater than those in the lowest risk quartile. CONCLUSIONS: These findings  highlight the importance of integrating diverse ancestries in PRS development and  accounting for subpopulation genetic variation to improve the predictive accuracy  of BP PRS in African populations.",
            "publicationTitle": "Circulation. Genomic and precision medicine",
            "publisher": "",
            "place": "United States",
            "date": "2025 Jun",
            "volume": "18",
            "issue": "3",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "e005048",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Circ Genom Precis Med",
            "DOI": "10.1161/CIRCGEN.124.005048",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "40421529",
            "PMCID": "PMC12173169",
            "ISSN": "2574-8300",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "*Black People/genetics"
                },
                {
                    "tag": "*Blood Pressure/genetics"
                },
                {
                    "tag": "*Hypertension/genetics"
                },
                {
                    "tag": "*Multifactorial Inheritance"
                },
                {
                    "tag": "Adult"
                },
                {
                    "tag": "Female"
                },
                {
                    "tag": "Genetic Predisposition to Disease"
                },
                {
                    "tag": "Genetic Risk Score"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Male"
                },
                {
                    "tag": "Middle Aged"
                },
                {
                    "tag": "Polymorphism, Single Nucleotide"
                },
                {
                    "tag": "Risk Factors"
                },
                {
                    "tag": "black people"
                },
                {
                    "tag": "blood pressure"
                },
                {
                    "tag": "genetic risk score"
                },
                {
                    "tag": "genetic variation"
                },
                {
                    "tag": "genome-wide association study"
                },
                {
                    "tag": "hypertension"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    },
    {
        "key": "2CU4G5HK",
        "version": 212687,
        "library": {
            "type": "user",
            "id": 6212901,
            "name": "Nick Petosky",
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        },
        "meta": {
            "creatorSummary": "Ramos et al.",
            "parsedDate": "2018-10",
            "numChildren": 0
        },
        "data": {
            "key": "2CU4G5HK",
            "version": 212687,
            "itemType": "journalArticle",
            "title": "Primary brain calcification: an international study reporting novel variants and associated phenotypes.",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Eliana Marisa",
                    "lastName": "Ramos"
                },
                {
                    "creatorType": "author",
                    "firstName": "Miryam",
                    "lastName": "Carecchio"
                },
                {
                    "creatorType": "author",
                    "firstName": "Roberta",
                    "lastName": "Lemos"
                },
                {
                    "creatorType": "author",
                    "firstName": "Joana",
                    "lastName": "Ferreira"
                },
                {
                    "creatorType": "author",
                    "firstName": "Andrea",
                    "lastName": "Legati"
                },
                {
                    "creatorType": "author",
                    "firstName": "Renee Louise",
                    "lastName": "Sears"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sandy Chan",
                    "lastName": "Hsu"
                },
                {
                    "creatorType": "author",
                    "firstName": "Celeste",
                    "lastName": "Panteghini"
                },
                {
                    "creatorType": "author",
                    "firstName": "Luca",
                    "lastName": "Magistrelli"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ettore",
                    "lastName": "Salsano"
                },
                {
                    "creatorType": "author",
                    "firstName": "Silvia",
                    "lastName": "Esposito"
                },
                {
                    "creatorType": "author",
                    "firstName": "Franco",
                    "lastName": "Taroni"
                },
                {
                    "creatorType": "author",
                    "firstName": "Anne-Claire",
                    "lastName": "Richard"
                },
                {
                    "creatorType": "author",
                    "firstName": "Christine",
                    "lastName": "Tranchant"
                },
                {
                    "creatorType": "author",
                    "firstName": "Mathieu",
                    "lastName": "Anheim"
                },
                {
                    "creatorType": "author",
                    "firstName": "Xavier",
                    "lastName": "Ayrignac"
                },
                {
                    "creatorType": "author",
                    "firstName": "Cyril",
                    "lastName": "Goizet"
                },
                {
                    "creatorType": "author",
                    "firstName": "Marie",
                    "lastName": "Vidailhet"
                },
                {
                    "creatorType": "author",
                    "firstName": "David",
                    "lastName": "Maltete"
                },
                {
                    "creatorType": "author",
                    "firstName": "David",
                    "lastName": "Wallon"
                },
                {
                    "creatorType": "author",
                    "firstName": "Thierry",
                    "lastName": "Frebourg"
                },
                {
                    "creatorType": "author",
                    "firstName": "Lylyan",
                    "lastName": "Pimentel"
                },
                {
                    "creatorType": "author",
                    "firstName": "Daniel H.",
                    "lastName": "Geschwind"
                },
                {
                    "creatorType": "author",
                    "firstName": "Olivier",
                    "lastName": "Vanakker"
                },
                {
                    "creatorType": "author",
                    "firstName": "Douglas",
                    "lastName": "Galasko"
                },
                {
                    "creatorType": "author",
                    "firstName": "Brent L.",
                    "lastName": "Fogel"
                },
                {
                    "creatorType": "author",
                    "firstName": "A. Micheil",
                    "lastName": "Innes"
                },
                {
                    "creatorType": "author",
                    "firstName": "Alison",
                    "lastName": "Ross"
                },
                {
                    "creatorType": "author",
                    "firstName": "William B.",
                    "lastName": "Dobyns"
                },
                {
                    "creatorType": "author",
                    "firstName": "Diana",
                    "lastName": "Alcantara"
                },
                {
                    "creatorType": "author",
                    "firstName": "Mark",
                    "lastName": "O'Driscoll"
                },
                {
                    "creatorType": "author",
                    "firstName": "Didier",
                    "lastName": "Hannequin"
                },
                {
                    "creatorType": "author",
                    "firstName": "Dominique",
                    "lastName": "Campion"
                },
                {
                    "creatorType": "author",
                    "firstName": "João R.",
                    "lastName": "Oliveira"
                },
                {
                    "creatorType": "author",
                    "firstName": "Barbara",
                    "lastName": "Garavaglia"
                },
                {
                    "creatorType": "author",
                    "firstName": "Giovanni",
                    "lastName": "Coppola"
                },
                {
                    "creatorType": "author",
                    "firstName": "Gaël",
                    "lastName": "Nicolas"
                }
            ],
            "abstractNote": "Primary familial brain calcification (PFBC) is a rare cerebral microvascular calcifying disorder with a wide spectrum of motor, cognitive, and  neuropsychiatric symptoms. It is typically inherited as an autosomal-dominant  trait with four causative genes identified so far: SLC20A2, PDGFRB, PDGFB, and  XPR1. Our study aimed at screening the coding regions of these genes in a series  of 177 unrelated probands that fulfilled the diagnostic criteria for primary  brain calcification regardless of their family history. Sequence variants were  classified as pathogenic, likely pathogenic, or of uncertain significance (VUS),  based on the ACMG-AMP recommendations. We identified 45 probands (25.4%) carrying  either pathogenic or likely pathogenic variants (n = 34, 19.2%) or VUS (n = 11,  6.2%). SLC20A2 provided the highest contribution (16.9%), followed by XPR1 and  PDGFB (3.4% each), and PDGFRB (1.7%). A total of 81.5% of carriers were  symptomatic and the most recurrent symptoms were parkinsonism, cognitive  impairment, and psychiatric disturbances (52.3%, 40.9%, and 38.6% of symptomatic  individuals, respectively), with a wide range of age at onset (from childhood to  81 years). While the pathogenic and likely pathogenic variants identified in this  study can be used for genetic counseling, the VUS will require additional  evidence, such as recurrence in unrelated patients, in order to be classified as  pathogenic.",
            "publicationTitle": "European journal of human genetics : EJHG",
            "publisher": "",
            "place": "England",
            "date": "2018 Oct",
            "volume": "26",
            "issue": "10",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "1462-1477",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Eur J Hum Genet",
            "DOI": "10.1038/s41431-018-0185-4",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "PMID": "29955172",
            "PMCID": "PMC6138755",
            "ISSN": "1476-5438 1018-4813",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "eng",
            "libraryCatalog": "",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "Adolescent"
                },
                {
                    "tag": "Adult"
                },
                {
                    "tag": "Aged"
                },
                {
                    "tag": "Aged, 80 and over"
                },
                {
                    "tag": "Brain Diseases/*genetics/physiopathology"
                },
                {
                    "tag": "Calcinosis/*genetics/physiopathology"
                },
                {
                    "tag": "Child"
                },
                {
                    "tag": "Cognitive Dysfunction/*genetics/physiopathology"
                },
                {
                    "tag": "Female"
                },
                {
                    "tag": "Genetic Variation/*genetics"
                },
                {
                    "tag": "Heterozygote"
                },
                {
                    "tag": "Humans"
                },
                {
                    "tag": "Male"
                },
                {
                    "tag": "Middle Aged"
                },
                {
                    "tag": "Mutation/genetics"
                },
                {
                    "tag": "Pedigree"
                },
                {
                    "tag": "Phenotype"
                },
                {
                    "tag": "Proto-Oncogene Proteins c-sis/genetics"
                },
                {
                    "tag": "Receptor, Platelet-Derived Growth Factor beta/genetics"
                },
                {
                    "tag": "Receptors, G-Protein-Coupled/drug effects"
                },
                {
                    "tag": "Receptors, Virus/drug effects"
                },
                {
                    "tag": "Sodium-Phosphate Cotransporter Proteins, Type III/genetics"
                },
                {
                    "tag": "Xenotropic and Polytropic Retrovirus Receptor"
                },
                {
                    "tag": "Young Adult"
                }
            ],
            "collections": [
                "27Q945GJ"
            ],
            "relations": {},
            "dateAdded": "2026-09-22T16:25:30Z",
            "dateModified": "2026-09-22T16:25:30Z"
        }
    }
]