[ { "key": "M8CCMXGZ", "version": 26, "library": { "type": "group", "id": 84116, "name": "Cell Biology", "links": { "alternate": { "href": "https://www.zotero.org/groups/cell_biology", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/84116/items/M8CCMXGZ", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/cell_biology/items/M8CCMXGZ", "type": "text/html" } }, "meta": { "createdByUser": { "id": 978552, "username": "tomhodder", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/tomhodder", "type": "text/html" } } }, "creatorSummary": "Hubbard and Miller", "parsedDate": "2007-04", "numChildren": 2 }, "data": { "key": "M8CCMXGZ", "version": 26, "itemType": "journalArticle", "title": "Receptor tyrosine kinases: mechanisms of activation and signaling", "creators": [ { "creatorType": "author", "firstName": "Stevan R", "lastName": "Hubbard" }, { "creatorType": "author", "firstName": "W Todd", "lastName": "Miller" } ], "abstractNote": "Receptor tyrosine kinases (RTKs) are essential components of signal transduction pathways that mediate cell-to-cell communication. These single-pass transmembrane receptors, which bind polypeptide ligands — mainly growth factors — play key roles in processes such as cellular growth, differentiation, metabolism and motility. Recent progress has been achieved towards an understanding of the precise (and varied) mechanisms by which RTKs are activated by ligand binding and by which signals are propagated from the activated receptors to downstream targets in the cell.", "publicationTitle": "Current Opinion in Cell Biology", "publisher": "", "place": "", "date": "April 2007", "volume": "19", "issue": "2", "section": "", "partNumber": "", "partTitle": "", "pages": "117-123", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1016/j.ceb.2007.02.010", "citationKey": "", "url": "http://www.sciencedirect.com/science/article/pii/S0955067407000245", "accessDate": "2012-07-29T22:03:07Z", "PMID": "", "PMCID": "", "ISSN": "0955-0674", "archive": "", "archiveLocation": "", "shortTitle": "Receptor tyrosine kinases", "language": "", "libraryCatalog": "ScienceDirect", "callNumber": "", "rights": "", "extra": "", "tags": [ { "tag": "#nosource" } ], "collections": [ "2WQXMB9K" ], "relations": {}, "dateAdded": "2012-07-29T22:03:07Z", "dateModified": "2026-03-06T19:05:12Z" } }, { "key": "3ISA65NZ", "version": 26, "library": { "type": "group", "id": 84116, "name": "Cell Biology", "links": { "alternate": { "href": "https://www.zotero.org/groups/cell_biology", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/84116/items/3ISA65NZ", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/cell_biology/items/3ISA65NZ", "type": "text/html" } }, "meta": { "createdByUser": { "id": 978552, "username": "tomhodder", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/tomhodder", "type": "text/html" } } }, "creatorSummary": "Wikipedia contributors", "parsedDate": "2012-07-21", "numChildren": 1 }, "data": { "key": "3ISA65NZ", "version": 26, "itemType": "encyclopediaArticle", "title": "Enzyme Commission number", "creators": [ { "creatorType": "author", "name": "Wikipedia contributors" } ], "abstractNote": "The Enzyme Commission number (EC number) is a numerical classification scheme for enzymes, based on the chemical reactions they catalyze.[1] As a system of enzyme nomenclature, every EC number is associated with a recommended name for the respective enzyme.", "encyclopediaTitle": "Wikipedia, the free encyclopedia", "series": "", "seriesNumber": "", "volume": "", "numberOfVolumes": "", "edition": "", "date": "2012-07-21T09:53:01Z", "publisher": "Wikimedia Foundation, Inc.", "place": "", "pages": "", "ISBN": "", "DOI": "", "citationKey": "", "url": "http://en.wikipedia.org/w/index.php?title=Enzyme_Commission_number&oldid=493128988", "accessDate": "2012-07-29T02:09:43Z", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "Wikipedia", "callNumber": "", "rights": "Creative Commons Attribution-ShareAlike License", "extra": "Page Version ID: 493128988", "tags": [ { "tag": "#nosource" } ], "collections": [ "QTXIVI5T" ], "relations": {}, "dateAdded": "2012-07-29T02:09:43Z", "dateModified": "2026-03-06T19:05:12Z" } }, { "key": "JQ63DSUV", "version": 26, "library": { "type": "group", "id": 84116, "name": "Cell Biology", "links": { "alternate": { "href": "https://www.zotero.org/groups/cell_biology", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/84116/items/JQ63DSUV", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/cell_biology/items/JQ63DSUV", "type": "text/html" } }, "meta": { "createdByUser": { "id": 978552, "username": "tomhodder", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/tomhodder", "type": "text/html" } } }, "creatorSummary": "Manning et al.", "parsedDate": "2002-12-06", "numChildren": 2 }, "data": { "key": "JQ63DSUV", "version": 26, "itemType": "journalArticle", "title": "The Protein Kinase Complement of the Human Genome", "creators": [ { "creatorType": "author", "firstName": "G.", "lastName": "Manning" }, { "creatorType": "author", "firstName": "D. B.", "lastName": "Whyte" }, { "creatorType": "author", "firstName": "R.", "lastName": "Martinez" }, { "creatorType": "author", "firstName": "T.", "lastName": "Hunter" }, { "creatorType": "author", "firstName": "S.", "lastName": "Sudarsanam" } ], "abstractNote": "We have catalogued the protein kinase complement of the human genome (the “kinome”) using public and proprietary genomic, complementary DNA, and expressed sequence tag (EST) sequences. This provides a starting point for comprehensive analysis of protein phosphorylation in normal and disease states, as well as a detailed view of the current state of human genome analysis through a focus on one large gene family. We identify 518 putative protein kinase genes, of which 71 have not previously been reported or described as kinases, and we extend or correct the protein sequences of 56 more kinases. New genes include members of well-studied families as well as previously unidentified families, some of which are conserved in model organisms. Classification and comparison with model organism kinomes identified orthologous groups and highlighted expansions specific to human and other lineages. We also identified 106 protein kinase pseudogenes. Chromosomal mapping revealed several small clusters of kinase genes and revealed that 244 kinases map to disease loci or cancer amplicons.", "publicationTitle": "Science", "publisher": "", "place": "", "date": "12/06/2002", "volume": "298", "issue": "5600", "section": "", "partNumber": "", "partTitle": "", "pages": "1912-1934", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Science", "DOI": "10.1126/science.1075762", "citationKey": "", "url": "http://www.sciencemag.org/content/298/5600/1912", "accessDate": "2012-07-28T20:45:52Z", "PMID": "", "PMCID": "", "ISSN": "0036-8075, 1095-9203", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "www.sciencemag.org.libezproxy.open.ac.uk", "callNumber": "", "rights": "", "extra": "", "tags": [ { "tag": "#nosource" } ], "collections": [ "2WQXMB9K" ], "relations": {}, "dateAdded": "2012-07-28T20:45:52Z", "dateModified": "2026-03-06T19:05:12Z" } }, { "key": "5SX2VBTF", "version": 26, "library": { "type": "group", "id": 84116, "name": "Cell Biology", "links": { "alternate": { "href": "https://www.zotero.org/groups/cell_biology", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/84116/items/5SX2VBTF", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/cell_biology/items/5SX2VBTF", "type": "text/html" } }, "meta": { "createdByUser": { "id": 978552, "username": "tomhodder", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/tomhodder", "type": "text/html" } } }, "creatorSummary": "Aslan and Thomas", "parsedDate": "2009", "numChildren": 2 }, "data": { "key": "5SX2VBTF", "version": 26, "itemType": "journalArticle", "title": "Death by Committee: Organellar Trafficking and Communication in Apoptosis", "creators": [ { "creatorType": "author", "firstName": "Joseph E.", "lastName": "Aslan" }, { "creatorType": "author", "firstName": "Gary", "lastName": "Thomas" } ], "abstractNote": "Apoptosis proceeds through a set of evolutionarily conserved processes that co-ordinate the elimination of damaged or unneeded cells. This program of cell death is carried out by organelle-directed regulators, including the Bcl-2 proteins, and ultimately executed by proteases of the caspase family. Although the biochemical mechanisms of apoptosis are increasingly understood, the underlying cell biology orchestrating programmed cell death remains enigmatic. In this review, we summarize the current understanding of Bcl-2 protein regulation and caspase activation while examining cell biological mechanisms and consequences of apoptotic induction. Organellar contributions to apoptotic induction include death receptor endocytosis, mitochondrial and lysosomal permeabilization, endoplasmic reticulum calcium release and fragmentation of the Golgi apparatus. These early apoptotic events are accompanied by stabilization of the microtubule cytoskeleton and translocation of organelles to the microtubule organizing center. Together, these phenomena establish a model of apoptotic induction whereby a cytoskeletal-dependent coalescence and ’scrambling’ of organelles in the paranuclear region co-ordinates apoptotic communication, caspase activation and cell death.", "publicationTitle": "Traffic", "publisher": "", "place": "", "date": "2009", "volume": "10", "issue": "10", "section": "", "partNumber": "", "partTitle": "", "pages": "1390–1404", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1111/j.1600-0854.2009.00951.x", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/j.1600-0854.2009.00951.x/abstract", "accessDate": "2012-07-28T19:37:59Z", "PMID": "", "PMCID": "", "ISSN": "1600-0854", "archive": "", "archiveLocation": "", "shortTitle": "Death by Committee", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2009 John Wiley & Sons A/S", "extra": "", "tags": [ { "tag": "#nosource" }, { "tag": "14-3-3", 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