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B.", "lastName": "Lindner" }, { "creatorType": "author", "firstName": "R.", "lastName": "Madden" }, { "creatorType": "author", "firstName": "A.", "lastName": "Demarez" }, { "creatorType": "author", "firstName": "E. J.", "lastName": "Stewart" }, { "creatorType": "author", "firstName": "F.", "lastName": "Taddei" } ], "abstractNote": "", "publicationTitle": "Proceedings of the National Academy of Sciences", "publisher": "", "place": "", "date": "2008-02-25", "volume": "105", "issue": "8", "section": "", "partNumber": "", "partTitle": "", "pages": "3076-3081", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1073/pnas.0708931105", "citationKey": "", "url": "http://www.pnas.org/cgi/doi/10.1073/pnas.0708931105", "accessDate": "2012-01-24T13:34:08Z", "PMID": "", "PMCID": "", "ISSN": "0027-8424, 1091-6490", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "CrossRef", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "ZPE8HIIP" ], "relations": {}, "dateAdded": "2012-01-24T13:34:08Z", "dateModified": "2012-01-24T13:34:08Z" } }, { "key": "SKRWWU59", "version": 1, "library": { "type": "group", "id": 65786, "name": "erc", "links": { "alternate": { "href": "https://www.zotero.org/groups/erc", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/65786/items/SKRWWU59", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/erc/items/SKRWWU59", "type": "text/html" } }, "meta": { "createdByUser": { "id": 96807, "username": "druga.stefania", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/druga.stefania", "type": "text/html" } } }, "creatorSummary": "Giraud", "parsedDate": "2001-03-30", "numChildren": 0 }, "data": { "key": "SKRWWU59", "version": 1, "itemType": "journalArticle", "title": "Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut", "creators": [ { "creatorType": "author", "firstName": "A.", "lastName": "Giraud" } ], "abstractNote": "", "publicationTitle": "Science", "publisher": "", "place": "", "date": "2001-3-30", "volume": "291", "issue": "5513", "section": "", "partNumber": "", "partTitle": "", "pages": "2606-2608", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1126/science.1056421", "citationKey": "", "url": "http://www.sciencemag.org/cgi/doi/10.1126/science.1056421", "accessDate": "2012-01-24T13:28:04Z", "PMID": "", "PMCID": "", "ISSN": "00368075, 10959203", "archive": "", "archiveLocation": "", "shortTitle": "Costs and Benefits of High Mutation Rates", "language": "", "libraryCatalog": "CrossRef", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "ZPE8HIIP" ], "relations": {}, "dateAdded": "2012-01-24T13:28:04Z", "dateModified": "2012-01-24T13:28:04Z" } }, { "key": "MAFEZTFR", "version": 1, "library": { "type": "group", "id": 65786, "name": "erc", "links": { "alternate": { "href": "https://www.zotero.org/groups/erc", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/65786/items/MAFEZTFR", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/erc/items/MAFEZTFR", "type": "text/html" } }, "meta": { "createdByUser": { "id": 96807, "username": "druga.stefania", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/druga.stefania", "type": "text/html" } } }, "creatorSummary": "De Paepe and Taddei", "parsedDate": "2006-07", "numChildren": 0 }, "data": { "key": "MAFEZTFR", "version": 1, "itemType": "journalArticle", "title": "Viruses' life history: towards a mechanistic basis of a trade-off between survival and reproduction among phages", "creators": [ { "creatorType": "author", "firstName": "Marianne", "lastName": "De Paepe" }, { "creatorType": "author", "firstName": "François", "lastName": "Taddei" } ], "abstractNote": "Life history theory accounts for variations in many traits involved in the reproduction and survival of living organisms, by determining the constraints leading to trade-offs among these different traits. The main life history traits of phages-viruses that infect bacteria-are the multiplication rate in the host, the survivorship of virions in the external environment, and their mode of transmission. By comparing life history traits of 16 phages infecting the bacteria Escherichia coli, we show that their mortality rate is constant with time and positively [corrected] correlated to their multiplication rate in the bacterial host. Even though these viruses do not age, this result is in line with the trade-off between survival and reproduction previously observed in numerous aging organisms. Furthermore, a multiple regression shows that the combined effects of two physical parameters, namely, the capsid thickness and the density of the packaged genome, account for 82% of the variation in the mortality rate. The correlations between life history traits and physical characteristics of virions may provide a mechanistic explanation of this trade-off. The fact that this trade-off is present in this very simple biological situation suggests that it might be a fundamental property of evolving entities produced under constraints. Moreover, such a positive correlation between mortality and multiplication reveals an underexplored trade-off in host-parasite interactions.", "publicationTitle": "PLoS Biology", "publisher": "", "place": "", "date": "Jul 2006", "volume": "4", "issue": "7", "section": "", "partNumber": "", "partTitle": "", "pages": "e193", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "PLoS Biol.", "DOI": "10.1371/journal.pbio.0040193", "citationKey": "", "url": "http://www.ncbi.nlm.nih.gov/pubmed/16756387", "accessDate": "2012-01-24T13:25:58Z", "PMID": "", "PMCID": "", "ISSN": "1545-7885", "archive": "", "archiveLocation": "", "shortTitle": "Viruses' life history", "language": "", "libraryCatalog": "NCBI PubMed", "callNumber": "", "rights": "", "extra": "PMID: 16756387", "tags": [ { "tag": "Bacteriophages", "type": 1 }, { "tag": "Leviviridae", "type": 1 }, { "tag": "Microbial Viability", "type": 1 }, { "tag": "Microscopy, Electron", "type": 1 }, { "tag": "Temperature", "type": 1 }, { "tag": "Virion", "type": 1 }, { "tag": "Virus Replication", "type": 1 } ], "collections": [ "ZPE8HIIP" ], "relations": {}, "dateAdded": "2012-01-24T13:25:58Z", "dateModified": "2012-01-24T13:25:58Z" } }, { "key": "TJUTPVCF", "version": 1, "library": { "type": "group", "id": 65786, "name": "erc", "links": { "alternate": { "href": "https://www.zotero.org/groups/erc", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/65786/items/TJUTPVCF", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/erc/items/TJUTPVCF", "type": "text/html" } }, "meta": { "createdByUser": { "id": 96807, "username": "druga.stefania", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/druga.stefania", "type": "text/html" } } }, "creatorSummary": "Taddei et al.", "parsedDate": "1997-06-12", "numChildren": 0 }, "data": { "key": "TJUTPVCF", "version": 1, "itemType": "journalArticle", "title": "Role of mutator alleles in adaptive evolution", "creators": [ { "creatorType": "author", "firstName": "F", "lastName": "Taddei" }, { "creatorType": "author", "firstName": "M", "lastName": "Radman" }, { "creatorType": "author", "firstName": "J", "lastName": "Maynard-Smith" }, { "creatorType": "author", "firstName": "B", "lastName": "Toupance" }, { "creatorType": "author", "firstName": "P H", "lastName": "Gouyon" }, { "creatorType": "author", "firstName": "B", "lastName": "Godelle" } ], "abstractNote": "Because most newly arising mutations are neutral or deleterious, it has been argued that the mutation rate has evolved to be as low as possible, limited only by the cost of error-avoidance and error-correction mechanisms. But up to one per cent of natural bacterial isolates are 'mutator' clones that have high mutation rates. We consider here whether high mutation rates might play an important role in adaptive evolution. Models of large, asexual, clonal populations adapting to a new environment show that strong mutator genes (such as those that increase mutation rates by 1,000-fold) can accelerate adaptation, even if the mutator gene remains at a very low frequency (for example, 10[-5]). Less potent mutators (10 to 100-fold increase) can become fixed in a fraction of finite populations. The parameters of the model have been set to values typical for Escherichia coli cultures, which behave in a manner similar to the model in long-term adaptation experiments.", "publicationTitle": "Nature", "publisher": "", "place": "", "date": "Jun 12, 1997", "volume": "387", "issue": "6634", "section": "", "partNumber": "", "partTitle": "", "pages": "700-702", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Nature", "DOI": "10.1038/42696", "citationKey": "", "url": "http://www.ncbi.nlm.nih.gov/pubmed/9192893", "accessDate": "2012-01-24T13:19:38Z", "PMID": "", "PMCID": "", "ISSN": "0028-0836", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "NCBI PubMed", "callNumber": "", "rights": "", "extra": "PMID: 9192893", "tags": [ { "tag": "Adaptation, Physiological", "type": 1 }, { "tag": "Alleles", "type": 1 }, { "tag": "Animals", "type": 1 }, { "tag": "Directed Molecular Evolution", "type": 1 }, { "tag": "Escherichia coli", "type": 1 }, { "tag": "Evolution, Molecular", "type": 1 }, { "tag": "Mammals", "type": 1 }, { "tag": "Models, Biological", "type": 1 }, { "tag": "Mutation", "type": 1 }, { "tag": "Selection, Genetic", "type": 1 } ], "collections": [ "ZPE8HIIP" ], "relations": {}, "dateAdded": "2012-01-24T13:19:38Z", "dateModified": "2012-01-24T13:19:38Z" } }, { "key": "8P34HMZP", "version": 1, "library": { "type": "group", "id": 65786, "name": "erc", "links": { "alternate": { "href": "https://www.zotero.org/groups/erc", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/65786/items/8P34HMZP", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/erc/items/8P34HMZP", "type": "text/html" } }, "meta": { "createdByUser": { "id": 96807, "username": "druga.stefania", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/druga.stefania", "type": "text/html" } } }, "creatorSummary": "Delebecque et al.", "parsedDate": "2011-06-23", "numChildren": 0 }, "data": { "key": "8P34HMZP", "version": 1, "itemType": "journalArticle", "title": "Organization of Intracellular Reactions with Rationally Designed RNA Assemblies", "creators": [ { "creatorType": "author", "firstName": "C. 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