[
    {
        "key": "SG3BCJQZ",
        "version": 26,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/SG3BCJQZ",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/SG3BCJQZ",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "Pimentel et al.",
            "numChildren": 0
        },
        "data": {
            "key": "SG3BCJQZ",
            "version": 26,
            "itemType": "computerProgram",
            "title": "sleuth: inspect your RNA-Seq",
            "creators": [
                {
                    "creatorType": "programmer",
                    "firstName": "Harold",
                    "lastName": "Pimentel"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Nicolas",
                    "lastName": "Bray"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Suzette",
                    "lastName": "Puente"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Páll",
                    "lastName": "Melsted"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Lior",
                    "lastName": "Pachter"
                }
            ],
            "abstractNote": "",
            "seriesTitle": "",
            "versionNumber": "",
            "date": "",
            "system": "",
            "company": "",
            "place": "",
            "programmingLanguage": "",
            "rights": "",
            "citationKey": "",
            "url": "http://pachterlab.github.io/sleuth/",
            "accessDate": "",
            "DOI": "",
            "ISBN": "",
            "archive": "",
            "archiveLocation": "",
            "libraryCatalog": "",
            "callNumber": "",
            "shortTitle": "",
            "extra": "",
            "tags": [],
            "collections": [
                "7R5KRRSX"
            ],
            "relations": {},
            "dateAdded": "2016-05-31T05:00:04Z",
            "dateModified": "2016-05-31T05:01:55Z"
        }
    },
    {
        "key": "HQZ4MXHE",
        "version": 21,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/HQZ4MXHE",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/HQZ4MXHE",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "Preston-Werner",
            "parsedDate": "2016",
            "numChildren": 0
        },
        "data": {
            "key": "HQZ4MXHE",
            "version": 21,
            "itemType": "webpage",
            "title": "Jekyll",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Tom",
                    "lastName": "Preston-Werner"
                }
            ],
            "abstractNote": "",
            "websiteTitle": "",
            "websiteType": "",
            "date": "2016",
            "publisher": "",
            "place": "",
            "DOI": "",
            "citationKey": "",
            "url": "https://jekyllrb.com/",
            "accessDate": "",
            "shortTitle": "",
            "language": "",
            "rights": "",
            "extra": "",
            "tags": [],
            "collections": [
                "7R5KRRSX"
            ],
            "relations": {},
            "dateAdded": "2016-05-31T02:56:29Z",
            "dateModified": "2016-05-31T03:11:11Z"
        }
    },
    {
        "key": "AQPM5JZ9",
        "version": 21,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/AQPM5JZ9",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/AQPM5JZ9",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "Otto et al.",
            "parsedDate": "2016",
            "numChildren": 0
        },
        "data": {
            "key": "AQPM5JZ9",
            "version": 21,
            "itemType": "webpage",
            "title": "Bootstrap",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Mark",
                    "lastName": "Otto"
                },
                {
                    "creatorType": "author",
                    "firstName": "Jacob",
                    "lastName": "Thornton"
                },
                {
                    "creatorType": "author",
                    "firstName": "Chris",
                    "lastName": "Rebert"
                },
                {
                    "creatorType": "author",
                    "firstName": "Julian",
                    "lastName": "Thilo"
                },
                {
                    "creatorType": "author",
                    "firstName": "",
                    "lastName": "XhmikosR"
                },
                {
                    "creatorType": "author",
                    "firstName": "Heinrich",
                    "lastName": "Fenkart"
                },
                {
                    "creatorType": "author",
                    "firstName": "Patrick H.",
                    "lastName": "Lauke"
                }
            ],
            "abstractNote": "",
            "websiteTitle": "",
            "websiteType": "",
            "date": "2016",
            "publisher": "",
            "place": "",
            "DOI": "",
            "citationKey": "",
            "url": "http://getbootstrap.com/",
            "accessDate": "",
            "shortTitle": "",
            "language": "",
            "rights": "",
            "extra": "",
            "tags": [],
            "collections": [
                "7R5KRRSX"
            ],
            "relations": {},
            "dateAdded": "2016-05-31T03:03:05Z",
            "dateModified": "2016-05-31T03:11:04Z"
        }
    },
    {
        "key": "RA3XWJAU",
        "version": 21,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/RA3XWJAU",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/RA3XWJAU",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "SpryMedia",
            "parsedDate": "2016",
            "numChildren": 0
        },
        "data": {
            "key": "RA3XWJAU",
            "version": 21,
            "itemType": "webpage",
            "title": "DataTables",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "",
                    "lastName": "SpryMedia"
                }
            ],
            "abstractNote": "",
            "websiteTitle": "",
            "websiteType": "",
            "date": "2016",
            "publisher": "",
            "place": "",
            "DOI": "",
            "citationKey": "",
            "url": "https://datatables.net/",
            "accessDate": "",
            "shortTitle": "",
            "language": "",
            "rights": "",
            "extra": "",
            "tags": [],
            "collections": [
                "7R5KRRSX"
            ],
            "relations": {},
            "dateAdded": "2016-05-31T03:09:49Z",
            "dateModified": "2016-05-31T03:10:57Z"
        }
    },
    {
        "key": "VPCKK7SH",
        "version": 41,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/VPCKK7SH",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/VPCKK7SH",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/UAT477B2",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "numChildren": 0
        },
        "data": {
            "key": "VPCKK7SH",
            "version": 41,
            "parentItem": "UAT477B2",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "ScienceDirect Full Text PDF",
            "accessDate": "2016-05-30T18:02:55Z",
            "url": "http://www.sciencedirect.com/science/article/pii/S1934590915003586/pdfft?md5=acfa245a7b9b2a9f323d42c0ce6cdca6&pid=1-s2.0-S1934590915003586-main.pdf",
            "note": "",
            "contentType": "application/pdf",
            "charset": "",
            "filename": "Ng et al. - 2015 - Genome-wide RNA-Seq of Human Motor Neurons Implica.pdf",
            "md5": "a7c05723e254738fe6c29cd51ce3b17b",
            "mtime": 1464631381000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-30T18:02:55Z",
            "dateModified": "2016-05-30T18:03:01Z"
        }
    },
    {
        "key": "A6QHW3E3",
        "version": 30,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/A6QHW3E3",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/A6QHW3E3",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/UAT477B2",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            }
        },
        "data": {
            "key": "A6QHW3E3",
            "version": 30,
            "parentItem": "UAT477B2",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "ScienceDirect Snapshot",
            "accessDate": "2016-05-30T18:02:57Z",
            "url": "http://www.sciencedirect.com/science/article/pii/S1934590915003586",
            "note": "",
            "contentType": "text/html",
            "charset": "utf-8",
            "filename": "S1934590915003586.html",
            "md5": "264d1c7ce604179f01294d9c50e0d26a",
            "mtime": 1464631377000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-30T18:02:57Z",
            "dateModified": "2016-05-30T18:02:57Z"
        }
    },
    {
        "key": "UAT477B2",
        "version": 13,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/UAT477B2",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/UAT477B2",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "Ng et al.",
            "parsedDate": "2015-11-05",
            "numChildren": 2
        },
        "data": {
            "key": "UAT477B2",
            "version": 13,
            "itemType": "journalArticle",
            "title": "Genome-wide RNA-Seq of Human Motor Neurons Implicates Selective ER Stress Activation in Spinal Muscular Atrophy",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Shi-Yan",
                    "lastName": "Ng"
                },
                {
                    "creatorType": "author",
                    "firstName": "Boon Seng",
                    "lastName": "Soh"
                },
                {
                    "creatorType": "author",
                    "firstName": "Natalia",
                    "lastName": "Rodriguez-Muela"
                },
                {
                    "creatorType": "author",
                    "firstName": "David G.",
                    "lastName": "Hendrickson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Feodor",
                    "lastName": "Price"
                },
                {
                    "creatorType": "author",
                    "firstName": "John L.",
                    "lastName": "Rinn"
                },
                {
                    "creatorType": "author",
                    "firstName": "Lee L.",
                    "lastName": "Rubin"
                }
            ],
            "abstractNote": "Summary\nSpinal muscular atrophy (SMA) is caused by mutations in the SMN1 gene. Because this gene is expressed ubiquitously, it remains poorly understood why motor neurons (MNs) are one of the most affected cell types. To address this question, we carried out RNA sequencing studies using fixed, antibody-labeled, and purified MNs produced from control and SMA patient-derived induced pluripotent stem cells (iPSCs). We found SMA-specific changes in MNs, including hyper-activation of the ER stress pathway. Functional studies demonstrated that inhibition of ER stress improves MN survival in vitro even in MNs expressing low SMN. In SMA mice, systemic delivery of an ER stress inhibitor that crosses the blood-brain barrier led to the preservation of spinal cord MNs. Therefore, our study implies that selective activation of ER stress underlies MN death in SMA. Moreover, the approach we have taken would be broadly applicable to the study of disease-prone human cells in heterogeneous cultures.",
            "publicationTitle": "Cell Stem Cell",
            "publisher": "",
            "place": "",
            "date": "November 5, 2015",
            "volume": "17",
            "issue": "5",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "569-584",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Cell Stem Cell",
            "DOI": "10.1016/j.stem.2015.08.003",
            "citationKey": "",
            "url": "http://www.sciencedirect.com/science/article/pii/S1934590915003586",
            "accessDate": "2016-05-30T18:02:55Z",
            "PMID": "",
            "PMCID": "",
            "ISSN": "1934-5909",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "",
            "libraryCatalog": "ScienceDirect",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [],
            "collections": [
                "H2MN4E9Z"
            ],
            "relations": {},
            "dateAdded": "2016-05-30T18:02:55Z",
            "dateModified": "2016-05-30T18:02:55Z"
        }
    },
    {
        "key": "JGDWZ93W",
        "version": 38,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/JGDWZ93W",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/JGDWZ93W",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/IVG8CBS5",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "numChildren": 0
        },
        "data": {
            "key": "JGDWZ93W",
            "version": 38,
            "parentItem": "IVG8CBS5",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "Full Text PDF",
            "accessDate": "2016-05-30T18:00:27Z",
            "url": "http://nar.oxfordjournals.org/content/42/D1/D749.full.pdf",
            "note": "",
            "contentType": "application/pdf",
            "charset": "",
            "filename": "Flicek et al. - 2014 - Ensembl 2014.pdf",
            "md5": "eb7b7412a1a5198d9e3961d9d051d18e",
            "mtime": 1464631236000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-30T18:00:27Z",
            "dateModified": "2016-05-30T18:00:36Z"
        }
    },
    {
        "key": "IG355BTU",
        "version": 34,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/IG355BTU",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/IG355BTU",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/IVG8CBS5",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            }
        },
        "data": {
            "key": "IG355BTU",
            "version": 34,
            "parentItem": "IVG8CBS5",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "Snapshot",
            "accessDate": "2016-05-30T18:00:31Z",
            "url": "http://nar.oxfordjournals.org/content/42/D1/D749",
            "note": "",
            "contentType": "text/html",
            "charset": "utf-8",
            "filename": "D749.html",
            "md5": "69d0eca1915027ea3aa7c573d273c7d0",
            "mtime": 1464631232000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-30T18:00:31Z",
            "dateModified": "2016-05-30T18:00:31Z"
        }
    },
    {
        "key": "WCXNPRPZ",
        "version": 12,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/WCXNPRPZ",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/WCXNPRPZ",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/IVG8CBS5",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            }
        },
        "data": {
            "key": "WCXNPRPZ",
            "version": 12,
            "parentItem": "IVG8CBS5",
            "itemType": "attachment",
            "linkMode": "linked_url",
            "title": "PubMed entry",
            "accessDate": "2016-05-30T18:00:27Z",
            "url": "http://www.ncbi.nlm.nih.gov/pubmed/24316576",
            "note": "",
            "contentType": "text/html",
            "charset": "",
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-30T18:00:27Z",
            "dateModified": "2016-05-30T18:00:27Z"
        }
    },
    {
        "key": "IVG8CBS5",
        "version": 12,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/IVG8CBS5",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/IVG8CBS5",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "Flicek et al.",
            "parsedDate": "2014-01-01",
            "numChildren": 3
        },
        "data": {
            "key": "IVG8CBS5",
            "version": 12,
            "itemType": "journalArticle",
            "title": "Ensembl 2014",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Paul",
                    "lastName": "Flicek"
                },
                {
                    "creatorType": "author",
                    "firstName": "M. Ridwan",
                    "lastName": "Amode"
                },
                {
                    "creatorType": "author",
                    "firstName": "Daniel",
                    "lastName": "Barrell"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kathryn",
                    "lastName": "Beal"
                },
                {
                    "creatorType": "author",
                    "firstName": "Konstantinos",
                    "lastName": "Billis"
                },
                {
                    "creatorType": "author",
                    "firstName": "Simon",
                    "lastName": "Brent"
                },
                {
                    "creatorType": "author",
                    "firstName": "Denise",
                    "lastName": "Carvalho-Silva"
                },
                {
                    "creatorType": "author",
                    "firstName": "Peter",
                    "lastName": "Clapham"
                },
                {
                    "creatorType": "author",
                    "firstName": "Guy",
                    "lastName": "Coates"
                },
                {
                    "creatorType": "author",
                    "firstName": "Stephen",
                    "lastName": "Fitzgerald"
                },
                {
                    "creatorType": "author",
                    "firstName": "Laurent",
                    "lastName": "Gil"
                },
                {
                    "creatorType": "author",
                    "firstName": "Carlos García",
                    "lastName": "Girón"
                },
                {
                    "creatorType": "author",
                    "firstName": "Leo",
                    "lastName": "Gordon"
                },
                {
                    "creatorType": "author",
                    "firstName": "Thibaut",
                    "lastName": "Hourlier"
                },
                {
                    "creatorType": "author",
                    "firstName": "Sarah",
                    "lastName": "Hunt"
                },
                {
                    "creatorType": "author",
                    "firstName": "Nathan",
                    "lastName": "Johnson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Thomas",
                    "lastName": "Juettemann"
                },
                {
                    "creatorType": "author",
                    "firstName": "Andreas K.",
                    "lastName": "Kähäri"
                },
                {
                    "creatorType": "author",
                    "firstName": "Stephen",
                    "lastName": "Keenan"
                },
                {
                    "creatorType": "author",
                    "firstName": "Eugene",
                    "lastName": "Kulesha"
                },
                {
                    "creatorType": "author",
                    "firstName": "Fergal J.",
                    "lastName": "Martin"
                },
                {
                    "creatorType": "author",
                    "firstName": "Thomas",
                    "lastName": "Maurel"
                },
                {
                    "creatorType": "author",
                    "firstName": "William M.",
                    "lastName": "McLaren"
                },
                {
                    "creatorType": "author",
                    "firstName": "Daniel N.",
                    "lastName": "Murphy"
                },
                {
                    "creatorType": "author",
                    "firstName": "Rishi",
                    "lastName": "Nag"
                },
                {
                    "creatorType": "author",
                    "firstName": "Bert",
                    "lastName": "Overduin"
                },
                {
                    "creatorType": "author",
                    "firstName": "Miguel",
                    "lastName": "Pignatelli"
                },
                {
                    "creatorType": "author",
                    "firstName": "Bethan",
                    "lastName": "Pritchard"
                },
                {
                    "creatorType": "author",
                    "firstName": "Emily",
                    "lastName": "Pritchard"
                },
                {
                    "creatorType": "author",
                    "firstName": "Harpreet S.",
                    "lastName": "Riat"
                },
                {
                    "creatorType": "author",
                    "firstName": "Magali",
                    "lastName": "Ruffier"
                },
                {
                    "creatorType": "author",
                    "firstName": "Daniel",
                    "lastName": "Sheppard"
                },
                {
                    "creatorType": "author",
                    "firstName": "Kieron",
                    "lastName": "Taylor"
                },
                {
                    "creatorType": "author",
                    "firstName": "Anja",
                    "lastName": "Thormann"
                },
                {
                    "creatorType": "author",
                    "firstName": "Stephen J.",
                    "lastName": "Trevanion"
                },
                {
                    "creatorType": "author",
                    "firstName": "Alessandro",
                    "lastName": "Vullo"
                },
                {
                    "creatorType": "author",
                    "firstName": "Steven P.",
                    "lastName": "Wilder"
                },
                {
                    "creatorType": "author",
                    "firstName": "Mark",
                    "lastName": "Wilson"
                },
                {
                    "creatorType": "author",
                    "firstName": "Amonida",
                    "lastName": "Zadissa"
                },
                {
                    "creatorType": "author",
                    "firstName": "Bronwen L.",
                    "lastName": "Aken"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ewan",
                    "lastName": "Birney"
                },
                {
                    "creatorType": "author",
                    "firstName": "Fiona",
                    "lastName": "Cunningham"
                },
                {
                    "creatorType": "author",
                    "firstName": "Jennifer",
                    "lastName": "Harrow"
                },
                {
                    "creatorType": "author",
                    "firstName": "Javier",
                    "lastName": "Herrero"
                },
                {
                    "creatorType": "author",
                    "firstName": "Tim J. P.",
                    "lastName": "Hubbard"
                },
                {
                    "creatorType": "author",
                    "firstName": "Rhoda",
                    "lastName": "Kinsella"
                },
                {
                    "creatorType": "author",
                    "firstName": "Matthieu",
                    "lastName": "Muffato"
                },
                {
                    "creatorType": "author",
                    "firstName": "Anne",
                    "lastName": "Parker"
                },
                {
                    "creatorType": "author",
                    "firstName": "Giulietta",
                    "lastName": "Spudich"
                },
                {
                    "creatorType": "author",
                    "firstName": "Andy",
                    "lastName": "Yates"
                },
                {
                    "creatorType": "author",
                    "firstName": "Daniel R.",
                    "lastName": "Zerbino"
                },
                {
                    "creatorType": "author",
                    "firstName": "Stephen M. J.",
                    "lastName": "Searle"
                }
            ],
            "abstractNote": "Ensembl (http://www.ensembl.org) creates tools and data resources to facilitate genomic analysis in chordate species with an emphasis on human, major vertebrate model organisms and farm animals. Over the past year we have increased the number of species that we support to 77 and expanded our genome browser with a new scrollable overview and improved variation and phenotype views. We also report updates to our core datasets and improvements to our gene homology relationships from the addition of new species. Our REST service has been extended with additional support for comparative genomics and ontology information. Finally, we provide updated information about our methods for data access and resources for user training.",
            "publicationTitle": "Nucleic Acids Research",
            "publisher": "",
            "place": "",
            "date": "01/01/2014",
            "volume": "42",
            "issue": "D1",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "D749-D755",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Nucl. Acids Res.",
            "DOI": "10.1093/nar/gkt1196",
            "citationKey": "",
            "url": "http://nar.oxfordjournals.org/content/42/D1/D749",
            "accessDate": "2016-05-30T18:00:27Z",
            "PMID": "",
            "PMCID": "",
            "ISSN": "0305-1048, 1362-4962",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "en",
            "libraryCatalog": "nar.oxfordjournals.org",
            "callNumber": "",
            "rights": "",
            "extra": "PMID: 24316576",
            "tags": [],
            "collections": [
                "H2MN4E9Z"
            ],
            "relations": {},
            "dateAdded": "2016-05-30T18:00:27Z",
            "dateModified": "2016-05-30T18:00:27Z"
        }
    },
    {
        "key": "5VTQ33WH",
        "version": 29,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/5VTQ33WH",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/5VTQ33WH",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/VQREEIG6",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            }
        },
        "data": {
            "key": "5VTQ33WH",
            "version": 29,
            "parentItem": "VQREEIG6",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "ScienceDirect Snapshot",
            "accessDate": "2016-05-29T04:29:58Z",
            "url": "http://www.sciencedirect.com/science/article/pii/S2001037014000427",
            "note": "",
            "contentType": "text/html",
            "charset": "utf-8",
            "filename": "S2001037014000427.html",
            "md5": "6ff55ab185330e54436a1a21edc247a0",
            "mtime": 1464496197000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-29T04:29:58Z",
            "dateModified": "2016-05-29T04:29:58Z"
        }
    },
    {
        "key": "2BKMBMAG",
        "version": 28,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/2BKMBMAG",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/2BKMBMAG",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/VQREEIG6",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "numChildren": 0
        },
        "data": {
            "key": "2BKMBMAG",
            "version": 28,
            "parentItem": "VQREEIG6",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "ScienceDirect Full Text PDF",
            "accessDate": "2016-05-29T04:29:55Z",
            "url": "http://www.sciencedirect.com/science/article/pii/S2001037014000427/pdfft?md5=27cca257307ea59f030c882fbeb4bf6f&pid=1-s2.0-S2001037014000427-main.pdf",
            "note": "",
            "contentType": "application/pdf",
            "charset": "",
            "filename": "Bhuvaneshwar et al. - 2015 - A case study for cloud based high throughput analy.pdf",
            "md5": "1eea6718ca7347476655ff45fe7850bc",
            "mtime": 1464496196000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-29T04:29:55Z",
            "dateModified": "2016-05-29T04:29:57Z"
        }
    },
    {
        "key": "VQREEIG6",
        "version": 11,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/VQREEIG6",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/VQREEIG6",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "Bhuvaneshwar et al.",
            "parsedDate": "2015",
            "numChildren": 2
        },
        "data": {
            "key": "VQREEIG6",
            "version": 11,
            "itemType": "journalArticle",
            "title": "A case study for cloud based high throughput analysis of NGS data using the globus genomics system",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Krithika",
                    "lastName": "Bhuvaneshwar"
                },
                {
                    "creatorType": "author",
                    "firstName": "Dinanath",
                    "lastName": "Sulakhe"
                },
                {
                    "creatorType": "author",
                    "firstName": "Robinder",
                    "lastName": "Gauba"
                },
                {
                    "creatorType": "author",
                    "firstName": "Alex",
                    "lastName": "Rodriguez"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ravi",
                    "lastName": "Madduri"
                },
                {
                    "creatorType": "author",
                    "firstName": "Utpal",
                    "lastName": "Dave"
                },
                {
                    "creatorType": "author",
                    "firstName": "Lukasz",
                    "lastName": "Lacinski"
                },
                {
                    "creatorType": "author",
                    "firstName": "Ian",
                    "lastName": "Foster"
                },
                {
                    "creatorType": "author",
                    "firstName": "Yuriy",
                    "lastName": "Gusev"
                },
                {
                    "creatorType": "author",
                    "firstName": "Subha",
                    "lastName": "Madhavan"
                }
            ],
            "abstractNote": "Next generation sequencing (NGS) technologies produce massive amounts of data requiring a powerful computational infrastructure, high quality bioinformatics software, and skilled personnel to operate the tools. We present a case study of a practical solution to this data management and analysis challenge that simplifies terabyte scale data handling and provides advanced tools for NGS data analysis. These capabilities are implemented using the “Globus Genomics” system, which is an enhanced Galaxy workflow system made available as a service that offers users the capability to process and transfer data easily, reliably and quickly to address end-to-endNGS analysis requirements. The Globus Genomics system is built on Amazon 's cloud computing infrastructure. The system takes advantage of elastic scaling of compute resources to run multiple workflows in parallel and it also helps meet the scale-out analysis needs of modern translational genomics research.",
            "publicationTitle": "Computational and Structural Biotechnology Journal",
            "publisher": "",
            "place": "",
            "date": "2015",
            "volume": "13",
            "issue": "",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "64-74",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Computational and Structural Biotechnology Journal",
            "DOI": "10.1016/j.csbj.2014.11.001",
            "citationKey": "",
            "url": "http://www.sciencedirect.com/science/article/pii/S2001037014000427",
            "accessDate": "2016-05-29T04:29:55Z",
            "PMID": "",
            "PMCID": "",
            "ISSN": "2001-0370",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "",
            "libraryCatalog": "ScienceDirect",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "Cloud computing",
                    "type": 1
                },
                {
                    "tag": "Galaxy",
                    "type": 1
                },
                {
                    "tag": "Next generation sequencing",
                    "type": 1
                },
                {
                    "tag": "Translational research",
                    "type": 1
                }
            ],
            "collections": [
                "H2MN4E9Z"
            ],
            "relations": {},
            "dateAdded": "2016-05-29T04:29:55Z",
            "dateModified": "2016-05-29T04:29:55Z"
        }
    },
    {
        "key": "9R9M8DFQ",
        "version": 10,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/9R9M8DFQ",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/9R9M8DFQ",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/TZW2B525",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            }
        },
        "data": {
            "key": "9R9M8DFQ",
            "version": 10,
            "parentItem": "TZW2B525",
            "itemType": "attachment",
            "linkMode": "linked_url",
            "title": "Google Books Link",
            "accessDate": "2016-05-29T04:28:23Z",
            "url": "https://books.google.com/books?id=JcmSAwAAQBAJ",
            "note": "",
            "contentType": "text/html",
            "charset": "",
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-29T04:28:23Z",
            "dateModified": "2016-05-29T04:28:23Z"
        }
    },
    {
        "key": "TZW2B525",
        "version": 10,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/TZW2B525",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/TZW2B525",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "Stodden et al.",
            "parsedDate": "2014-04-14",
            "numChildren": 1
        },
        "data": {
            "key": "TZW2B525",
            "version": 10,
            "itemType": "book",
            "title": "Implementing Reproducible Research",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Victoria",
                    "lastName": "Stodden"
                },
                {
                    "creatorType": "author",
                    "firstName": "Friedrich",
                    "lastName": "Leisch"
                },
                {
                    "creatorType": "author",
                    "firstName": "Roger D.",
                    "lastName": "Peng"
                }
            ],
            "abstractNote": "In computational science, reproducibility requires that researchers make code and data available to others so that the data can be analyzed in a similar manner as in the original publication. Code must be available to be distributed, data must be accessible in a readable format, and a platform must be available for widely distributing the data and code. In addition, both data and code need to be licensed permissively enough so that others can reproduce the work without a substantial legal burden. Implementing Reproducible Research covers many of the elements necessary for conducting and distributing reproducible research. It explains how to accurately reproduce a scientific result.   Divided into three parts, the book discusses the tools, practices, and dissemination platforms for ensuring reproducibility in computational science. It describes:   Computational tools, such as Sweave, knitr, VisTrails, Sumatra, CDE, and the Declaratron system Open source practices, good programming practices, trends in open science, and the role of cloud computing in reproducible research Software and methodological platforms, including open source software packages, RunMyCode platform, and open access journals  Each part presents contributions from leaders who have developed software and other products that have advanced the field. Supplementary material is available at www.ImplementingRR.org.",
            "series": "",
            "seriesNumber": "",
            "volume": "",
            "numberOfVolumes": "",
            "edition": "",
            "date": "2014-04-14",
            "publisher": "CRC Press",
            "place": "",
            "originalDate": "",
            "originalPublisher": "",
            "originalPlace": "",
            "format": "",
            "numPages": "450",
            "ISBN": "978-1-4665-6159-5",
            "DOI": "",
            "citationKey": "",
            "url": "",
            "accessDate": "",
            "ISSN": "",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "en",
            "libraryCatalog": "Google Books",
            "callNumber": "",
            "rights": "",
            "extra": "",
            "tags": [
                {
                    "tag": "Computers / Mathematical & Statistical Software",
                    "type": 1
                },
                {
                    "tag": "Mathematics / Probability & Statistics / General",
                    "type": 1
                },
                {
                    "tag": "Science / Life Sciences / Biology",
                    "type": 1
                }
            ],
            "collections": [
                "ZSETRDEF"
            ],
            "relations": {},
            "dateAdded": "2016-05-29T04:28:23Z",
            "dateModified": "2016-05-29T04:28:23Z"
        }
    },
    {
        "key": "QZEKQWFZ",
        "version": 42,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/QZEKQWFZ",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/QZEKQWFZ",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/DWFXM95P",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            }
        },
        "data": {
            "key": "QZEKQWFZ",
            "version": 42,
            "parentItem": "DWFXM95P",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "Snapshot",
            "accessDate": "2016-05-29T04:26:53Z",
            "url": "https://www.crcpress.com/Implementing-Reproducible-Research/Stodden-Leisch-Peng/p/book/9781466561595",
            "note": "",
            "contentType": "text/html",
            "charset": "utf-8",
            "filename": "9781466561595.html",
            "md5": "401d356454a1eb3576c0320d0f5e9d3f",
            "mtime": 1464496013000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-29T04:26:53Z",
            "dateModified": "2016-05-29T04:26:53Z"
        }
    },
    {
        "key": "DWFXM95P",
        "version": 9,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/DWFXM95P",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/DWFXM95P",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "parsedDate": "2014-04-14",
            "numChildren": 1
        },
        "data": {
            "key": "DWFXM95P",
            "version": 9,
            "itemType": "webpage",
            "title": "Implementing Reproducible Research",
            "creators": [],
            "abstractNote": "In computational science, reproducibility requires that researchers make code and data available to others so that the data can be analyzed in a similar manner as in the original publication. Code must be available to be distributed, data must be accessible in a readable format, and a platform must",
            "websiteTitle": "CRC Press",
            "websiteType": "",
            "date": "2014-04-14",
            "publisher": "",
            "place": "",
            "DOI": "",
            "citationKey": "",
            "url": "https://www.crcpress.com/Implementing-Reproducible-Research/Stodden-Leisch-Peng/p/book/9781466561595",
            "accessDate": "2016-05-29T04:26:50Z",
            "shortTitle": "",
            "language": "",
            "rights": "",
            "extra": "",
            "tags": [],
            "collections": [],
            "relations": {},
            "dateAdded": "2016-05-29T04:26:50Z",
            "dateModified": "2016-05-29T04:26:50Z"
        }
    },
    {
        "key": "G8CJUZIU",
        "version": 32,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/G8CJUZIU",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/G8CJUZIU",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/VF49FSWV",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            }
        },
        "data": {
            "key": "G8CJUZIU",
            "version": 32,
            "parentItem": "VF49FSWV",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "R Package Snapshot",
            "accessDate": "2016-05-25T20:38:12Z",
            "url": "https://cran.r-project.org/web/packages/shiny/index.html",
            "note": "",
            "contentType": "text/html",
            "charset": "utf-8",
            "filename": "index.html",
            "md5": "ff305f7522263142d004604022281458",
            "mtime": 1464208692000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-25T20:38:12Z",
            "dateModified": "2016-05-25T20:38:12Z"
        }
    },
    {
        "key": "VF49FSWV",
        "version": 7,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/VF49FSWV",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/VF49FSWV",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "Chang et al.",
            "parsedDate": "2016-03-28",
            "numChildren": 1
        },
        "data": {
            "key": "VF49FSWV",
            "version": 7,
            "itemType": "computerProgram",
            "title": "shiny: Web Application Framework for R",
            "creators": [
                {
                    "creatorType": "programmer",
                    "firstName": "Winston",
                    "lastName": "Chang"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Joe",
                    "lastName": "Cheng"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "J. J.",
                    "lastName": "Allaire"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Yihui",
                    "lastName": "Xie"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Jonathan",
                    "lastName": "McPherson"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "",
                    "lastName": "RStudio"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "jQuery Foundation (jQuery library and jQuery UI",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "jQuery contributors (jQuery library; authors listed",
                    "lastName": "in\ninst/www/shared/jquery-AUTHORS.txt)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "jQuery UI contributors (jQuery UI library; authors listed",
                    "lastName": "in\ninst/www/shared/jqueryui/1.10.4/AUTHORS.txt)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Mark Otto (Bootstrap",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Jacob Thornton (Bootstrap",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Bootstrap contributors (Bootstrap",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "",
                    "lastName": "Twitter"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Inc (Bootstrap",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Alexander Farkas (html5shiv",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Scott Jehl (Respond js",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Stefan Petre (Bootstrap-datepicker",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Andrew Rowls (Bootstrap-datepicker",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Dave Gandy (Font-Awesome",
                    "lastName": "font)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Brian Reavis (selectize js",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Kristopher Michael Kowal (es5-shim",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "es5-shim contributors (es5-shim",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Denis Ineshin (ion rangeSlider",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Sami Samhuri (Javascript strftime",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "SpryMedia Limited (DataTables",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "John Fraser (showdown js",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "John Gruber (showdown js",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "Ivan Sagalaev (highlight js",
                    "lastName": "library)"
                },
                {
                    "creatorType": "programmer",
                    "firstName": "R. Core Team (tar implementation from",
                    "lastName": "R)"
                }
            ],
            "abstractNote": "Makes it incredibly easy to build interactive web\napplications with R. Automatic \"reactive\" binding between inputs and\noutputs and extensive pre-built widgets make it possible to build\nbeautiful, responsive, and powerful applications with minimal effort.",
            "seriesTitle": "",
            "versionNumber": "0.13.2",
            "date": "2016-03-28",
            "system": "",
            "company": "",
            "place": "",
            "programmingLanguage": "",
            "rights": "GPL-3 | file LICENSE",
            "citationKey": "",
            "url": "https://cran.r-project.org/web/packages/shiny/index.html",
            "accessDate": "2016-05-25T20:38:09Z",
            "DOI": "",
            "ISBN": "",
            "archive": "",
            "archiveLocation": "",
            "libraryCatalog": "R-Packages",
            "callNumber": "",
            "shortTitle": "shiny",
            "extra": "",
            "tags": [],
            "collections": [
                "H2MN4E9Z"
            ],
            "relations": {},
            "dateAdded": "2016-05-25T20:38:09Z",
            "dateModified": "2016-05-25T20:38:09Z"
        }
    },
    {
        "key": "ZT78T2KZ",
        "version": 44,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/ZT78T2KZ",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/ZT78T2KZ",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/X4FC2I4H",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "numChildren": 0
        },
        "data": {
            "key": "ZT78T2KZ",
            "version": 44,
            "parentItem": "X4FC2I4H",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "Full Text PDF",
            "accessDate": "2016-05-25T19:07:41Z",
            "url": "http://www.nature.com/nbt/journal/v34/n5/pdf/nbt.3519.pdf",
            "note": "",
            "contentType": "application/pdf",
            "charset": "",
            "filename": "Bray et al. - 2016 - Near-optimal probabilistic RNA-seq quantification.pdf",
            "md5": "4004f3160539ffa7fd51d131f6ab9e61",
            "mtime": 1464203275000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-25T19:07:41Z",
            "dateModified": "2016-05-25T19:07:55Z"
        }
    },
    {
        "key": "WD5T9T23",
        "version": 45,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/WD5T9T23",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/WD5T9T23",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/X4FC2I4H",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            }
        },
        "data": {
            "key": "WD5T9T23",
            "version": 45,
            "parentItem": "X4FC2I4H",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "Snapshot",
            "accessDate": "2016-05-25T19:07:47Z",
            "url": "http://www.nature.com/nbt/journal/v34/n5/full/nbt.3519.html",
            "note": "",
            "contentType": "text/html",
            "charset": "utf-8",
            "filename": "nbt.3519.html",
            "md5": "4e94881f518de67763503c617ee60bce",
            "mtime": 1464203268000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-25T19:07:47Z",
            "dateModified": "2016-05-25T19:07:47Z"
        }
    },
    {
        "key": "X4FC2I4H",
        "version": 6,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/X4FC2I4H",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/X4FC2I4H",
                "type": "text/html"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "creatorSummary": "Bray et al.",
            "parsedDate": "2016-05",
            "numChildren": 2
        },
        "data": {
            "key": "X4FC2I4H",
            "version": 6,
            "itemType": "journalArticle",
            "title": "Near-optimal probabilistic RNA-seq quantification",
            "creators": [
                {
                    "creatorType": "author",
                    "firstName": "Nicolas L.",
                    "lastName": "Bray"
                },
                {
                    "creatorType": "author",
                    "firstName": "Harold",
                    "lastName": "Pimentel"
                },
                {
                    "creatorType": "author",
                    "firstName": "Páll",
                    "lastName": "Melsted"
                },
                {
                    "creatorType": "author",
                    "firstName": "Lior",
                    "lastName": "Pachter"
                }
            ],
            "abstractNote": "We present kallisto, an RNA-seq quantification program that is two orders of magnitude faster than previous approaches and achieves similar accuracy. Kallisto pseudoaligns reads to a reference, producing a list of transcripts that are compatible with each read while avoiding alignment of individual bases. We use kallisto to analyze 30 million unaligned paired-end RNA-seq reads in <10 min on a standard laptop computer. This removes a major computational bottleneck in RNA-seq analysis.",
            "publicationTitle": "Nature Biotechnology",
            "publisher": "",
            "place": "",
            "date": "May 2016",
            "volume": "34",
            "issue": "5",
            "section": "",
            "partNumber": "",
            "partTitle": "",
            "pages": "525-527",
            "series": "",
            "seriesTitle": "",
            "seriesText": "",
            "journalAbbreviation": "Nat Biotech",
            "DOI": "10.1038/nbt.3519",
            "citationKey": "",
            "url": "http://www.nature.com/nbt/journal/v34/n5/full/nbt.3519.html",
            "accessDate": "2016-05-25T19:07:41Z",
            "PMID": "",
            "PMCID": "",
            "ISSN": "1087-0156",
            "archive": "",
            "archiveLocation": "",
            "shortTitle": "",
            "language": "en",
            "libraryCatalog": "www.nature.com",
            "callNumber": "",
            "rights": "© 2016 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.",
            "extra": "",
            "tags": [
                {
                    "tag": "Genome informatics",
                    "type": 1
                },
                {
                    "tag": "Software",
                    "type": 1
                },
                {
                    "tag": "Transcriptomics",
                    "type": 1
                }
            ],
            "collections": [
                "H2MN4E9Z"
            ],
            "relations": {},
            "dateAdded": "2016-05-25T19:07:41Z",
            "dateModified": "2016-05-25T19:07:41Z"
        }
    },
    {
        "key": "T9I4X95Q",
        "version": 40,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/T9I4X95Q",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/T9I4X95Q",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/RMGRJM9D",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            },
            "numChildren": 0
        },
        "data": {
            "key": "T9I4X95Q",
            "version": 40,
            "parentItem": "RMGRJM9D",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "Full Text PDF",
            "accessDate": "2016-05-25T19:05:18Z",
            "url": "http://www.nature.com/nbt/journal/v34/n3/pdf/nbt.3442.pdf",
            "note": "",
            "contentType": "application/pdf",
            "charset": "",
            "filename": "Solomon and Kingsford - 2016 - Fast search of thousands of short-read sequencing .pdf",
            "md5": "5560e6905222cd067ea43445e20a0f2b",
            "mtime": 1464203127000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-25T19:05:18Z",
            "dateModified": "2016-05-25T19:05:27Z"
        }
    },
    {
        "key": "M99JNXJW",
        "version": 35,
        "library": {
            "type": "group",
            "id": 544549,
            "name": "bears_lair",
            "links": {
                "alternate": {
                    "href": "https://www.zotero.org/groups/bears_lair",
                    "type": "text/html"
                }
            }
        },
        "links": {
            "self": {
                "href": "https://api.zotero.org/groups/544549/items/M99JNXJW",
                "type": "application/json"
            },
            "alternate": {
                "href": "https://www.zotero.org/groups/bears_lair/items/M99JNXJW",
                "type": "text/html"
            },
            "up": {
                "href": "https://api.zotero.org/groups/544549/items/RMGRJM9D",
                "type": "application/json"
            }
        },
        "meta": {
            "createdByUser": {
                "id": 1396413,
                "username": "haroldpimentel",
                "name": "",
                "links": {
                    "alternate": {
                        "href": "https://www.zotero.org/haroldpimentel",
                        "type": "text/html"
                    }
                }
            }
        },
        "data": {
            "key": "M99JNXJW",
            "version": 35,
            "parentItem": "RMGRJM9D",
            "itemType": "attachment",
            "linkMode": "imported_url",
            "title": "Snapshot",
            "accessDate": "2016-05-25T19:05:24Z",
            "url": "http://www.nature.com/nbt/journal/v34/n3/full/nbt.3442.html",
            "note": "",
            "contentType": "text/html",
            "charset": "utf-8",
            "filename": "nbt.3442.html",
            "md5": "e96648d8f888ad65f5a5fc6c68a01dd5",
            "mtime": 1464203124000,
            "tags": [],
            "relations": {},
            "dateAdded": "2016-05-25T19:05:24Z",
            "dateModified": "2016-05-25T19:05:24Z"
        }
    }
]