[ { "key": "MTTFIQHJ", "version": 4, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/MTTFIQHJ", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/MTTFIQHJ", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2738591, "username": "CathePe", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/cathepe", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "MTTFIQHJ", "version": 4, "itemType": "webpage", "title": "Zotero | Groups > Docu Informatisée", "creators": [], "abstractNote": "", "websiteTitle": "", "websiteType": "", "date": "", "publisher": "", "place": "", "DOI": "", "citationKey": "", "url": "https://www.zotero.org/groups/docu_informatise", "accessDate": "2015-11-25T13:45:31Z", "shortTitle": "", "language": "", "rights": "", "extra": "", "tags": [], "collections": [], "relations": {}, "dateAdded": "2015-11-25T13:46:08Z", "dateModified": "2015-11-25T13:46:08Z" } }, { "key": "JCFD3JDH", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/JCFD3JDH", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/JCFD3JDH", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/RCHCSG6R", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "JCFD3JDH", "version": 3, "parentItem": "RCHCSG6R", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2015-11-18T13:38:22Z", "url": "http://onlinelibrary.wiley.com/doi/10.1002/jcc.20764/abstract", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "abstract.html", "md5": "497e0dd276f954c824490e4c667e3393", "mtime": 1447853903343, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "RP42JPN5", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/RP42JPN5", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/RP42JPN5", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/QTWADHH8", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "RP42JPN5", "version": 3, "parentItem": "QTWADHH8", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2015-11-18T13:42:33Z", "url": "http://onlinelibrary.wiley.com/doi/10.1002/anie.200602315/abstract", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "abstract.html", "md5": "c3c48d879bc29fde2ac0dca1ed1c683b", "mtime": 1447854154022, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "AFFFFAKP", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/AFFFFAKP", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/AFFFFAKP", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/RVCNHVN2", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "AFFFFAKP", "version": 3, "parentItem": "RVCNHVN2", "itemType": "attachment", "linkMode": "imported_url", "title": "ACS Full Text Snapshot", "accessDate": "2015-11-18T13:51:20Z", "url": "http://pubs.acs.org/doi/full/10.1021/ct8000359", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "ct8000359.html", "md5": "5c4794fb1b7ab60b37b6ef65c3112f29", "mtime": 1447854682405, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "CUFHU7E6", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/CUFHU7E6", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/CUFHU7E6", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/ZR8JNQ68", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "CUFHU7E6", "version": 3, "parentItem": "ZR8JNQ68", "itemType": "attachment", "linkMode": "imported_url", "title": "jcs8505.q - 837.full.pdf", "accessDate": "2015-11-17T15:45:21Z", "url": "http://jcs.biologists.org/content/joces/114/5/837.full.pdf", "note": "", "contentType": "application/pdf", "charset": "utf-8", "filename": "837.full.pdf", "md5": "7bbb226921ab0600c7a2302e50856166", "mtime": 1447775121631, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "HDVEHTJN", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/HDVEHTJN", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/HDVEHTJN", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/E8EJP389", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "HDVEHTJN", "version": 3, "parentItem": "E8EJP389", "itemType": "attachment", "linkMode": "imported_url", "title": "ScienceDirect Snapshot", "accessDate": "2015-11-17T15:26:21Z", "url": "http://www.sciencedirect.com/science/article/pii/S0167779905002738", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "S0167779905002738.html", "md5": "755c01a91b23bc62a1c7c7e8f1bdefd6", "mtime": 1447773985535, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "9UKZCHHQ", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/9UKZCHHQ", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/9UKZCHHQ", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/7MRE9VWH", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "9UKZCHHQ", "version": 3, "parentItem": "7MRE9VWH", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2015-11-17T15:47:22Z", "url": "http://www.nature.com/nbt/journal/v22/n4/full/nbt945.html", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "nbt945.html", "md5": "d3d640161ec10339b78f6e6c2fc1cc2d", "mtime": 1447775244524, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "NWJW9GKS", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/NWJW9GKS", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/NWJW9GKS", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/WKQU7RQV", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "NWJW9GKS", "version": 3, "parentItem": "WKQU7RQV", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2015-11-17T15:42:40Z", "url": "http://jcs.biologists.org/content/120/24/4247", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "4247.html", "md5": "3ede7b6d779c1d44c719cdedd4d2ed55", "mtime": 1447774962671, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "WTCBJHJE", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/WTCBJHJE", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/WTCBJHJE", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/H5DQNWPK", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "WTCBJHJE", "version": 3, "parentItem": "H5DQNWPK", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2015-11-17T15:49:09Z", "url": "http://onlinelibrary.wiley.com/doi/10.1562/2005-10-02-IR-708/abstract", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "abstract.html", "md5": "ebe4b072479445b66abc53d4f476ff2c", "mtime": 1447775350496, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "ZWGSVEZM", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/ZWGSVEZM", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/ZWGSVEZM", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/38ZWPIAW", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "ZWGSVEZM", "version": 3, "parentItem": "38ZWPIAW", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2015-11-18T13:47:08Z", "url": "http://www.pnas.org/content/104/32/13005", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "13005.html", "md5": "80a18956508a4ba8408fb1d408d4c2b2", "mtime": 1447854429725, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "2B24S3M8", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/2B24S3M8", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/2B24S3M8", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/38ZWPIAW", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "2B24S3M8", "version": 3, "parentItem": "38ZWPIAW", "itemType": "attachment", "linkMode": "imported_url", "title": "Full Text PDF", "accessDate": "2015-11-18T13:47:08Z", "url": "http://www.pnas.org/content/104/32/13005.full.pdf", "note": "", "contentType": "application/pdf", "charset": "", "filename": "Andresen et al. - 2007 - Structural basis for reversible photoswitching in .pdf", "md5": "9140b2151a45a8d1f398ec56d4269920", "mtime": 1447854442718, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "BP9Z2475", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/BP9Z2475", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/BP9Z2475", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/M93TPQI8", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "BP9Z2475", "version": 3, "parentItem": "M93TPQI8", "itemType": "attachment", "linkMode": "imported_url", "title": "ACS Full Text Snapshot", "accessDate": "2015-11-17T15:55:30Z", "url": "http://pubs.acs.org/doi/full/10.1021/ja0257725", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "ja0257725.html", "md5": "6aa9f9d6225e45c8709327d5baa7f6c4", "mtime": 1447775731782, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "ZNSX3Z3B", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/ZNSX3Z3B", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/ZNSX3Z3B", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/E28VWW5N", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "ZNSX3Z3B", "version": 3, "parentItem": "E28VWW5N", "itemType": "attachment", "linkMode": "imported_file", "title": "Vallverdu_et_al._-_2010_-_Relation_between_pH_structure_and_absorption_spe.pdf", "accessDate": "", "url": "", "note": "", "contentType": "application/pdf", "charset": "", "filename": "Vallverdu_et_al._-_2010_-_Relation_between_pH_structure_and_absorption_spe.pdf", "md5": "fc3293c5b5644a9e54ed3d23fc49f5e1", "mtime": 1447772243104, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "MFCWQ5IW", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/MFCWQ5IW", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/MFCWQ5IW", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/E8EJP389", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "MFCWQ5IW", "version": 3, "parentItem": "E8EJP389", "itemType": "attachment", "linkMode": "imported_url", "title": "Chudakov et al. - 2005 - Fluorescent proteins as a toolkit for in vivo imag.pdf", "accessDate": "2015-11-17T15:26:21Z", "url": "http://www.sciencedirect.com/science/article/pii/S0167779905002738/pdfft?md5=08370d2774e61ba435b4b5c78bcf318b&pid=1-s2.0-S0167779905002738-main.pdf", "note": "", "contentType": "application/pdf", "charset": "", "filename": "Chudakov et al. - 2005 - Fluorescent proteins as a toolkit for in vivo imag.pdf", "md5": "a3361fbcd355fbebadfb6fadd9f24f9a", "mtime": 1447773994457, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "8XZ89X78", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/8XZ89X78", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/8XZ89X78", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/85VQX7R9", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "8XZ89X78", "version": 3, "parentItem": "85VQX7R9", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2015-11-18T13:39:25Z", "url": "http://onlinelibrary.wiley.com/doi/10.1002/jcc.20667/abstract", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "abstract.html", "md5": "74cafc17ab087c4c35646fab6cf2f489", "mtime": 1447853966436, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "FQ9W7EXR", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/FQ9W7EXR", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/FQ9W7EXR", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/7BVVUR26", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } } }, "data": { "key": "FQ9W7EXR", "version": 3, "parentItem": "7BVVUR26", "itemType": "attachment", "linkMode": "imported_url", "title": "ACS Full Text Snapshot", "accessDate": "2015-11-17T15:52:46Z", "url": "http://pubs.acs.org/doi/full/10.1021/bi801400d", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "bi801400d.html", "md5": "2cdc8081c50fb6e9f420fec419bdd923", "mtime": 1447775568036, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "3IFCSHSW", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/3IFCSHSW", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/3IFCSHSW", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/2U37VZNW", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "3IFCSHSW", "version": 3, "parentItem": "2U37VZNW", "itemType": "attachment", "linkMode": "imported_url", "title": "PLoS Full Text PDF", "accessDate": "2015-11-18T13:45:42Z", "url": "http://www.ploscompbiol.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pcbi.1000034&representation=PDF", "note": "", "contentType": "application/pdf", "charset": "", "filename": "Schäfer et al. - 2008 - Chromophore Protonation State Controls Photoswitch.pdf", "md5": "f3c5087543ab07a87cbfed425810c519", "mtime": 1447854355772, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "U5EBCAWF", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/U5EBCAWF", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/U5EBCAWF", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/VUTJ6ECP", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "U5EBCAWF", "version": 3, "parentItem": "VUTJ6ECP", "itemType": "attachment", "linkMode": "imported_url", "title": "doi:10.1016/j.jmb.2007.02.007 - 1-s2.0-S0022283607001702-main.pdf", "accessDate": "2015-11-18T13:54:34Z", "url": "http://ac.els-cdn.com/S0022283607001702/1-s2.0-S0022283607001702-main.pdf?_tid=bb5d8e1a-8dfb-11e5-8bf7-00000aacb35e&acdnat=1447854982_5a8cc8ca84a9ee4eb3be29d04454d7bc", "note": "", "contentType": "application/pdf", "charset": "utf-8", "filename": "1-s2.0-S0022283607001702-main.pdf", "md5": "c92c9c15558f5889fce0347a301f66eb", "mtime": 1447854875471, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "BSMZ26JE", "version": 3, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/BSMZ26JE", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/BSMZ26JE", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/434133/items/WKQU7RQV", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "BSMZ26JE", "version": 3, "parentItem": "WKQU7RQV", "itemType": "attachment", "linkMode": "imported_url", "title": "Full Text PDF", "accessDate": "2015-11-17T15:42:40Z", "url": "http://jcs.biologists.org/content/joces/120/24/4247.full.pdf", "note": "", "contentType": "application/pdf", "charset": "", "filename": "Shaner et al. - 2007 - Advances in fluorescent protein technology.pdf", "md5": "52b20dc7502b77edcc1926d78a413666", "mtime": 1447775015369, "tags": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "9BBAWB6A", "version": 2, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/9BBAWB6A", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/9BBAWB6A", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "creatorSummary": "Tsien", "parsedDate": "1998", "numChildren": 0 }, "data": { "key": "9BBAWB6A", "version": 2, "itemType": "journalArticle", "title": "The green fluorescent protein", "creators": [ { "creatorType": "author", "firstName": "Roger Y.", "lastName": "Tsien" } ], "abstractNote": "", "publicationTitle": "Annual review of biochemistry", "publisher": "", "place": "", "date": "1998", "volume": "67", "issue": "1", "section": "", "partNumber": "", "partTitle": "", "pages": "509–544", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "", "citationKey": "", "url": "http://www.annualreviews.org/doi/abs/10.1146/annurev.biochem.67.1.509", "accessDate": "2015-11-17T15:12:41Z", "PMID": "", "PMCID": "", "ISSN": "", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "Google Scholar", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "38ZWPIAW", "version": 2, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/38ZWPIAW", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/38ZWPIAW", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "creatorSummary": "Andresen et al.", "parsedDate": "2007-08-07", "numChildren": 3 }, "data": { "key": "38ZWPIAW", "version": 2, "itemType": "journalArticle", "title": "Structural basis for reversible photoswitching in Dronpa", "creators": [ { "creatorType": "author", "firstName": "Martin", "lastName": "Andresen" }, { "creatorType": "author", "firstName": "Andre C.", "lastName": "Stiel" }, { "creatorType": "author", "firstName": "Simon", "lastName": "Trowitzsch" }, { "creatorType": "author", "firstName": "Gert", "lastName": "Weber" }, { "creatorType": "author", "firstName": "Christian", "lastName": "Eggeling" }, { "creatorType": "author", "firstName": "Markus C.", "lastName": "Wahl" }, { "creatorType": "author", "firstName": "Stefan W.", "lastName": "Hell" }, { "creatorType": "author", "firstName": "Stefan", "lastName": "Jakobs" } ], "abstractNote": "Dronpa is a novel GFP-like fluorescent protein with exceptional light-controlled switching properties. It may be reversibly switched between a fluorescent on-state and a nonfluorescent off-state by irradiation with light. To elucidate the molecular basis of the switching mechanism, we generated reversibly switchable Dronpa protein crystals. Using these crystals we determined the elusive dark-state structure of Dronpa at 1.95-Å resolution. We found that the photoswitching results in a cis–trans isomerization of the chromophore accompanied by complex structural rearrangements of four nearby amino acid residues. Because of this cascade of intramolecular events, the chromophore is exposed to distinct electrostatic surface potentials, which are likely to influence the protonation equilibria at the chromophore. We suggest a comprehensive model for the light-induced switching mechanism, connecting a cascade of structural rearrangements with different protonation states of the chromophore.", "publicationTitle": "Proceedings of the National Academy of Sciences", "publisher": "", "place": "", "date": "08/07/2007", "volume": "104", "issue": "32", "section": "", "partNumber": "", "partTitle": "", "pages": "13005-13009", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "PNAS", "DOI": "10.1073/pnas.0700629104", "citationKey": "", "url": "http://www.pnas.org/content/104/32/13005", "accessDate": "2015-11-18T13:47:08Z", "PMID": "", "PMCID": "", "ISSN": "0027-8424, 1091-6490", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "www.pnas.org", "callNumber": "", "rights": "", "extra": "PMID: 17646653", "tags": [ { "tag": "fluorescent protein", "type": 1 }, { "tag": "molecular switch", "type": 1 }, { "tag": "photochromism", "type": 1 }, { "tag": "photoisomerization", "type": 1 }, { "tag": "reversibly switchable fluorescent proteins", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "M93TPQI8", "version": 2, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/M93TPQI8", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/M93TPQI8", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "creatorSummary": "Seifert et al.", "parsedDate": "2002", "numChildren": 1 }, "data": { "key": "M93TPQI8", "version": 2, "itemType": "journalArticle", "title": "Slow Exchange in the Chromophore of a Green Fluorescent Protein Variant", "creators": [ { "creatorType": "author", "firstName": "Markus H. J.", "lastName": "Seifert" }, { "creatorType": "author", "firstName": "Dorota", "lastName": "Ksiazek" }, { "creatorType": "author", "firstName": "M. Kamran", "lastName": "Azim" }, { "creatorType": "author", "firstName": "Pawel", "lastName": "Smialowski" }, { "creatorType": "author", "firstName": "Nediljko", "lastName": "Budisa" }, { "creatorType": "author", "firstName": "Tad A.", "lastName": "Holak" } ], "abstractNote": "Green fluorescent protein and its mutants have become valuable tools in molecular biology. They also provide systems rich in photophysical and photochemical phenomena of which an understanding is important for the development of new and optimized variants of GFP. Surprisingly, not a single NMR study has been reported on GFPs until now, possibly because of their high tendency to aggregate. Here, we report the 19F nuclear magnetic resonance (NMR) studies on mutants of the green fluorescent protein (GFP) and cyan fluorescent protein (CFP) labeled with fluorinated tryptophans that enabled the detection of slow molecular motions in these proteins. The concerted use of dynamic NMR and 19F relaxation measurements, supported by temperature, concentration- and folding-dependent experiments provides direct evidence for the existence of a slow exchange process between two different conformational states of CFP. 19F NMR relaxation and line shape analysis indicate that the time scale of exchange between these states is in the range of 1.21.4 ms. Thermodynamic analysis revealed a difference in enthalpy H0 = (18.2 3.8) kJ/mol and entropy TS0 = (19.6 1.2) kJ/mol at T = 303 K for the two states involved in the exchange process, indicating an entropyenthalpy compensation. The free energy of activation was estimated to be approximately 60 kJ/mol. Exchange between two conformations, either of the chromophore itself or more likely of the closely related histidine 148, is suggested to be the structural process underlying the conformational mobility of GFPs. The possibility to generate a series of single-atom exchanges (\"atomic mutations\") like H F in this study offers a useful approach for characterizing and quantifying dynamic processes in proteins by NMR.", "publicationTitle": "Journal of the American Chemical Society", "publisher": "", "place": "", "date": "juillet 1, 2002", "volume": "124", "issue": "27", "section": "", "partNumber": "", "partTitle": "", "pages": "7932-7942", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "J. Am. Chem. Soc.", "DOI": "10.1021/ja0257725", "citationKey": "", "url": "http://dx.doi.org/10.1021/ja0257725", "accessDate": "2015-11-17T15:55:21Z", "PMID": "", "PMCID": "", "ISSN": "0002-7863", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "ACS Publications", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "E28VWW5N", "version": 2, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/E28VWW5N", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/E28VWW5N", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "creatorSummary": "Vallverdu et al.", "parsedDate": "2010", "numChildren": 1 }, "data": { "key": "E28VWW5N", "version": 2, "itemType": "journalArticle", "title": "Relation between pH, structure, and absorption spectrum of Cerulean: A study by molecular dynamics and TD DFT calculations", "creators": [ { "creatorType": "author", "firstName": "Germain", "lastName": "Vallverdu" }, { "creatorType": "author", "firstName": "Isabelle", "lastName": "Demachy" }, { "creatorType": "author", "firstName": "Fabienne", "lastName": "Mérola" }, { "creatorType": "author", "firstName": "Hélène", "lastName": "Pasquier" }, { "creatorType": "author", "firstName": "Jacqueline", "lastName": "Ridard" }, { "creatorType": "author", "firstName": "Bernard", "lastName": "Lévy" } ], "abstractNote": "", "publicationTitle": "Proteins: Structure, Function, and Bioinformatics", "publisher": "", "place": "", "date": "03/2010", "volume": "78", "issue": "4", "section": "", "partNumber": "", "partTitle": "", "pages": "1040-1054", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1002/prot.22628", "citationKey": "", "url": "http://doi.wiley.com/10.1002/prot.22628", "accessDate": "2015-11-17T15:02:24Z", "PMID": "", "PMCID": "", "ISSN": "08873585", "archive": "", "archiveLocation": "", "shortTitle": "Relation between pH, structure, and absorption spectrum of Cerulean", "language": "en", "libraryCatalog": "CrossRef", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "QTWADHH8", "version": 2, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/QTWADHH8", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/QTWADHH8", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "creatorSummary": "Schäfer et al.", "parsedDate": "2007-01-15", "numChildren": 1 }, "data": { "key": "QTWADHH8", "version": 2, "itemType": "journalArticle", "title": "Photoswitching of the Fluorescent Protein asFP595: Mechanism, Proton Pathways, and Absorption Spectra", "creators": [ { "creatorType": "author", "firstName": "Lars V.", "lastName": "Schäfer" }, { "creatorType": "author", "firstName": "Gerrit", "lastName": "Groenhof" }, { "creatorType": "author", "firstName": "Astrid R.", "lastName": "Klingen" }, { "creatorType": "author", "firstName": "G. Matthias", "lastName": "Ullmann" }, { "creatorType": "author", "firstName": "Martial", "lastName": "Boggio-Pasqua" }, { "creatorType": "author", "firstName": "Michael A.", "lastName": "Robb" }, { "creatorType": "author", "firstName": "Helmut", "lastName": "Grubmüller" } ], "abstractNote": "", "publicationTitle": "Angewandte Chemie International Edition", "publisher": "", "place": "", "date": "janvier 15, 2007", "volume": "46", "issue": "4", "section": "", "partNumber": "", "partTitle": "", "pages": "530-536", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Angewandte Chemie International Edition", "DOI": "10.1002/anie.200602315", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1002/anie.200602315/abstract", "accessDate": "2015-11-18T13:42:33Z", "PMID": "", "PMCID": "", "ISSN": "1521-3773", "archive": "", "archiveLocation": "", "shortTitle": "Photoswitching of the Fluorescent Protein asFP595", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "", "extra": "", "tags": [ { "tag": "absorption spectroscopy", "type": 1 }, { "tag": "isomerization", "type": 1 }, { "tag": "molecular dynamics", "type": 1 }, { "tag": "proteins", "type": 1 }, { "tag": "proton transport", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } }, { "key": "RVCNHVN2", "version": 2, "library": { "type": "group", "id": 434133, "name": "Docu Informatisée", "links": { "alternate": { "href": "https://www.zotero.org/groups/docu_informatise", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/434133/items/RVCNHVN2", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/docu_informatise/items/RVCNHVN2", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2697582, "username": "AnaisRmr", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/anaisrmr", "type": "text/html" } } }, "creatorSummary": "Moors et al.", "parsedDate": "2008", "numChildren": 1 }, "data": { "key": "RVCNHVN2", "version": 2, "itemType": "journalArticle", "title": "How Is cis−trans Isomerization Controlled in Dronpa Mutants? A Replica Exchange Molecular Dynamics Study", "creators": [ { "creatorType": "author", "firstName": "Samuel L. C.", "lastName": "Moors" }, { "creatorType": "author", "firstName": "Servaas", "lastName": "Michielssens" }, { "creatorType": "author", "firstName": "Cristina", "lastName": "Flors" }, { "creatorType": "author", "firstName": "Peter", "lastName": "Dedecker" }, { "creatorType": "author", "firstName": "Johan", "lastName": "Hofkens" }, { "creatorType": "author", "firstName": "Arnout", "lastName": "Ceulemans" } ], "abstractNote": "The reversibly photoactivatable green fluorescent protein analog Dronpa holds great promise as a marker for various new cellular imaging applications. Using a replica exchange method which combines both Hamiltonian and temperature exchanges, the ground-state dynamics of Dronpa and two mutants with increased switching kinetics, Val157Gly and Met159Thr, were compared. The dominant chromophore state was found to be the cis isomer in all three proteins. The simulation data suggest that both mutations strongly increase the chromophore flexibility and cis?trans isomerization rate. We identify three key amino acids, Val157, Met159, and Phe173, which are able to impede the bottom hula-twist transition path, depending on their position and rotameric state. We believe our insights will help to understand the switching process and provide useful information for the design of new variants with improved fluorescence properties.", "publicationTitle": "Journal of Chemical Theory and Computation", "publisher": "", "place": "", "date": "juin 1, 2008", "volume": "4", "issue": "6", "section": "", "partNumber": "", "partTitle": "", "pages": "1012-1020", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "J. Chem. Theory Comput.", "DOI": "10.1021/ct8000359", "citationKey": "", "url": "http://dx.doi.org/10.1021/ct8000359", "accessDate": "2015-11-18T13:51:12Z", "PMID": "", "PMCID": "", "ISSN": "1549-9618", "archive": "", "archiveLocation": "", "shortTitle": "How Is cis−trans Isomerization Controlled in Dronpa Mutants?", "language": "", "libraryCatalog": "ACS Publications", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [], "relations": {}, "dateAdded": "2015-11-24T14:26:19Z", "dateModified": "2015-11-24T14:26:19Z" } } ]