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"linked_url", "title": "PubMed entry", "accessDate": "2015-10-23T14:13:28Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/10554771", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2015-10-23T14:53:16Z", "dateModified": "2015-10-23T14:53:16Z" } }, { "key": "ENGMIUS6", "version": 3, "library": { "type": "group", "id": 419171, "name": "Biology 2002 Group 11 Sec 001", "links": { "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/419171/items/ENGMIUS6", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001/items/ENGMIUS6", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2714431, "username": "bethetterman", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/bethetterman", "type": "text/html" } } }, "creatorSummary": "Pines and Inouye", "parsedDate": "1999-08", "numChildren": 1 }, "data": { "key": "ENGMIUS6", "version": 3, "itemType": "journalArticle", "title": "Expression and secretion of proteins in E. coli", "creators": [ { "creatorType": "author", "firstName": "O.", "lastName": "Pines" }, { "creatorType": "author", "firstName": "M.", "lastName": "Inouye" } ], "abstractNote": "This review outlines approaches to the cloning and expression of proteins in Escherichia coli. The expression vectors described here (pIN-III derivatives) utilize the strong lipoprotein promoter, which is controlled by the lac-UV5 promoter-operator. These vectors provide the means for targeting a protein to any of the four subcellular compartments of the bacterial cell: cytoplasm, cytoplasmic membrane, periplasm, and outer membrane. Of particular importance is that secretion of proteins into the E. coli periplasm (using the OmpA signal peptide) is applicable for the production of both prokaryotic and eukaryotic proteins thereby enhancing protein activity and stability.", "publicationTitle": "Molecular Biotechnology", "publisher": "", "place": "", "date": "Aug 1999", "volume": "12", "issue": "1", "section": "", "partNumber": "", "partTitle": "", "pages": "25-34", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Mol. Biotechnol.", "DOI": "10.1385/MB:12:1:25", "citationKey": "", "url": "", "accessDate": "", "PMID": "", "PMCID": "", "ISSN": "1073-6085", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "eng", "libraryCatalog": "PubMed", "callNumber": "", "rights": "", "extra": "PMID: 10554771", "tags": [ { "tag": "Amino Acid Sequence", "type": 1 }, { "tag": "Base Sequence", "type": 1 }, { "tag": "Biotechnology", "type": 1 }, { "tag": "Cloning, Molecular", "type": 1 }, { "tag": "Escherichia coli", "type": 1 }, { "tag": "Genetic Vectors", "type": 1 }, { "tag": "Molecular Sequence Data", "type": 1 }, { "tag": "Recombinant Proteins", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2015-10-23T14:53:16Z", "dateModified": "2015-10-23T14:53:16Z" } }, { "key": "CGG4HG2K", "version": 3, "library": { "type": "group", "id": 419171, "name": "Biology 2002 Group 11 Sec 001", "links": { "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/419171/items/CGG4HG2K", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001/items/CGG4HG2K", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2714431, "username": "bethetterman", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/bethetterman", "type": "text/html" } } }, "creatorSummary": "Daubner et al.", "parsedDate": "1997-12-15", "numChildren": 1 }, "data": { "key": "CGG4HG2K", "version": 3, "itemType": "journalArticle", "title": "Expression and characterization of the catalytic domain of human phenylalanine hydroxylase", "creators": [ { "creatorType": "author", "firstName": "S. C.", "lastName": "Daubner" }, { "creatorType": "author", "firstName": "P. J.", "lastName": "Hillas" }, { "creatorType": "author", "firstName": "P. F.", "lastName": "Fitzpatrick" } ], "abstractNote": "A truncated version of human phenylalanine hydroxylase which contains the carboxy terminal 336 amino acids was produced in Escherichia coli. It was purified by ammonium sulfate precipitation, Q-Sepharose chromatography, and hydroxyapatite chromatography. The K(m) values of the truncated enzyme for tetrahydropterin substrates are not different from those of the full-length enzyme, nor are the Vmax values. The KM value for phenylalanine is 2-fold lower for the truncate than for the full-length enzyme. The metal content of the enzyme is 0.27 mol Fe per mole enzyme subunit, and it is activated 2.3-fold by addition of ferrous ion to assays; it is not activated by addition of copper. The truncated enzyme shows no lag in activity when an assay is started with phenylalanine, while the full-length enzyme shows a marked lag.", "publicationTitle": "Archives of Biochemistry and Biophysics", "publisher": "", "place": "", "date": "Dec 15, 1997", "volume": "348", "issue": "2", "section": "", "partNumber": "", "partTitle": "", "pages": "295-302", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Arch. Biochem. Biophys.", "DOI": "10.1006/abbi.1997.0435", "citationKey": "", "url": "", "accessDate": "", "PMID": "", "PMCID": "", "ISSN": "0003-9861", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "eng", "libraryCatalog": "PubMed", "callNumber": "", "rights": "", "extra": "PMID: 9434741", "tags": [ { "tag": "Binding Sites", "type": 1 }, { "tag": "Biopterin", "type": 1 }, { "tag": "Catalysis", "type": 1 }, { "tag": "Chromatography, High Pressure Liquid", "type": 1 }, { "tag": "Copper", "type": 1 }, { "tag": "Enzyme Activation", "type": 1 }, { "tag": "Escherichia coli", "type": 1 }, { "tag": "Ferrous Compounds", "type": 1 }, { "tag": "Humans", "type": 1 }, { "tag": "Iron", "type": 1 }, { "tag": "Kinetics", "type": 1 }, { "tag": "Phenylalanine", "type": 1 }, { "tag": "Phenylalanine Hydroxylase", "type": 1 }, { "tag": "Phenylketonurias", "type": 1 }, { "tag": "Recombinant Proteins", "type": 1 }, { "tag": "Tyrosine", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2015-10-23T14:53:10Z", "dateModified": "2015-10-23T14:53:10Z" } }, { "key": "Z6GHMAG4", "version": 3, "library": { "type": "group", "id": 419171, "name": "Biology 2002 Group 11 Sec 001", "links": { "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/419171/items/Z6GHMAG4", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001/items/Z6GHMAG4", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/419171/items/CGG4HG2K", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2714431, "username": "bethetterman", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/bethetterman", "type": "text/html" } } } }, "data": { "key": "Z6GHMAG4", "version": 3, "parentItem": "CGG4HG2K", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2015-10-22T01:50:35Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/9434741", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2015-10-23T14:53:10Z", "dateModified": "2015-10-23T14:53:10Z" } }, { "key": "5D326D2U", "version": 3, "library": { "type": "group", "id": 419171, "name": "Biology 2002 Group 11 Sec 001", "links": { "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/419171/items/5D326D2U", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001/items/5D326D2U", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/419171/items/GCJWFUA7", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2714431, "username": "bethetterman", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/bethetterman", "type": "text/html" } } } }, "data": { "key": "5D326D2U", "version": 3, "parentItem": "GCJWFUA7", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2015-10-22T01:37:53Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/8479900", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2015-10-23T14:53:07Z", "dateModified": "2015-10-23T14:53:07Z" } }, { "key": "GCJWFUA7", "version": 3, "library": { "type": "group", "id": 419171, "name": "Biology 2002 Group 11 Sec 001", "links": { "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/419171/items/GCJWFUA7", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001/items/GCJWFUA7", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2714431, "username": "bethetterman", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/bethetterman", "type": "text/html" } } }, "creatorSummary": "Lisser and Margalit", "parsedDate": "1993-04-11", "numChildren": 1 }, "data": { "key": "GCJWFUA7", "version": 3, "itemType": "journalArticle", "title": "Compilation of E. coli mRNA promoter sequences", "creators": [ { "creatorType": "author", "firstName": "S.", "lastName": "Lisser" }, { "creatorType": "author", "firstName": "H.", "lastName": "Margalit" } ], "abstractNote": "An updated compilation of 300 E. coli mRNA promoter sequences is presented. For each sequence the most recent relevant paper was checked, to verify the location of the transcriptional start position as identified experimentally. We comment on the reliability of the sequence databanks and analyze the conservation of known promoter features in the current compilation. This database is available by E-mail.", "publicationTitle": "Nucleic Acids Research", "publisher": "", "place": "", "date": "Apr 11, 1993", "volume": "21", "issue": "7", "section": "", "partNumber": "", "partTitle": "", "pages": "1507-1516", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Nucleic Acids Res.", "DOI": "", "citationKey": "", "url": "", "accessDate": "", "PMID": "", "PMCID": "", "ISSN": "0305-1048", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "eng", "libraryCatalog": "PubMed", "callNumber": "", "rights": "", "extra": "PMID: 8479900\nPMCID: PMC309355", "tags": [ { "tag": "Base Sequence", "type": 1 }, { "tag": "Databases, Factual", "type": 1 }, { "tag": "Escherichia coli", "type": 1 }, { "tag": "Molecular Sequence Data", "type": 1 }, { "tag": "Promoter Regions, Genetic", "type": 1 }, { "tag": "Transcription, Genetic", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2015-10-23T14:53:07Z", "dateModified": "2015-10-23T14:53:07Z" } }, { "key": "5T6JG5VD", "version": 3, "library": { "type": "group", "id": 419171, "name": "Biology 2002 Group 11 Sec 001", "links": { "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/419171/items/5T6JG5VD", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001/items/5T6JG5VD", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2714431, "username": "bethetterman", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/bethetterman", "type": "text/html" } } }, "creatorSummary": "Abelson et al.", "parsedDate": "1978-10", "numChildren": 1 }, "data": { "key": "5T6JG5VD", "version": 3, "itemType": "journalArticle", "title": "Comparative effects of citrovorum factor and carboxypeptidase G1 on cerebrospinal fluid-methotrexate pharmacokinetics", "creators": [ { "creatorType": "author", "firstName": "H. T.", "lastName": "Abelson" }, { "creatorType": "author", "firstName": "W.", "lastName": "Ensminger" }, { "creatorType": "author", "firstName": "A.", "lastName": "Rosowsky" }, { "creatorType": "author", "firstName": "J.", "lastName": "Uren" } ], "abstractNote": "A comparison between citrovorum factor (CF) and carboxypeptidase G1 (CPDG1) rescue with respect to cerebrospinal fluid (CSF)-methotrexate (MTX) disappearance was studied in a patient with recurrent medulloblastoma who had a ventriculoperitoneal shunt. CPDG1 rescue resulted in a prolonged CSF-MTX half-life of 16.5-23 hours in comparison with CF rescue where the CSF-MTX half-life was 6.5-7.2 hours. There was a positive clinical response measured by loss of bone pain, increased physical activity, and almost complete clearing of CSF blast cells. CPDG1 rescue after high-dose MTX may provide more intense and selective treatment for meningeal neoplasms.", "publicationTitle": "Cancer Treatment Reports", "publisher": "", "place": "", "date": "Oct 1978", "volume": "62", "issue": "10", "section": "", "partNumber": "", "partTitle": "", "pages": "1549-1552", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Cancer Treat Rep", "DOI": "", "citationKey": "", "url": "", "accessDate": "", "PMID": "", "PMCID": "", "ISSN": "0361-5960", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "eng", "libraryCatalog": "PubMed", "callNumber": "", "rights": "", "extra": "PMID: 309355", "tags": [ { "tag": "Adolescent", "type": 1 }, { "tag": "Brain Neoplasms", "type": 1 }, { "tag": "Carboxypeptidases", "type": 1 }, { "tag": "Drug Interactions", "type": 1 }, { "tag": "Drug Therapy, Combination", "type": 1 }, { "tag": "Humans", "type": 1 }, { "tag": "Kinetics", "type": 1 }, { "tag": "Leucovorin", "type": 1 }, { "tag": "Male", "type": 1 }, { "tag": "Medulloblastoma", "type": 1 }, { "tag": "Methotrexate", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2015-10-23T14:53:04Z", "dateModified": "2015-10-23T14:53:04Z" } }, { "key": "TQ3ITS7J", "version": 3, "library": { "type": "group", "id": 419171, "name": "Biology 2002 Group 11 Sec 001", "links": { "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/419171/items/TQ3ITS7J", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001/items/TQ3ITS7J", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/419171/items/5T6JG5VD", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2714431, "username": "bethetterman", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/bethetterman", "type": "text/html" } } } }, "data": { "key": "TQ3ITS7J", "version": 3, "parentItem": "5T6JG5VD", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2015-10-22T01:36:26Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/309355", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2015-10-23T14:53:04Z", "dateModified": "2015-10-23T14:53:04Z" } }, { "key": "3XDSBCSK", "version": 3, "library": { "type": "group", "id": 419171, "name": "Biology 2002 Group 11 Sec 001", "links": { "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/419171/items/3XDSBCSK", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001/items/3XDSBCSK", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/419171/items/PP7AITPR", "type": "application/json" } }, "meta": { "createdByUser": { "id": 2714431, "username": "bethetterman", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/bethetterman", "type": "text/html" } } } }, "data": { "key": "3XDSBCSK", "version": 3, "parentItem": "PP7AITPR", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2015-10-22T01:53:19Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/17612622", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2015-10-23T14:53:01Z", "dateModified": "2015-10-23T14:53:01Z" } }, { "key": "PP7AITPR", "version": 3, "library": { "type": "group", "id": 419171, "name": "Biology 2002 Group 11 Sec 001", "links": { "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/419171/items/PP7AITPR", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/biology_2002_group_11_sec_001/items/PP7AITPR", "type": "text/html" } }, "meta": { "createdByUser": { "id": 2714431, "username": "bethetterman", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/bethetterman", "type": "text/html" } } }, "creatorSummary": "MacDonald and D'Cunha", "parsedDate": "2007-06", "numChildren": 1 }, "data": { "key": "PP7AITPR", "version": 3, "itemType": "journalArticle", "title": "A modern view of phenylalanine ammonia lyase", "creators": [ { "creatorType": "author", "firstName": "M. Jason", "lastName": "MacDonald" }, { "creatorType": "author", "firstName": "Godwin B.", "lastName": "D'Cunha" } ], "abstractNote": "Phenylalanine ammonia lyase (PAL; E.C.4.3.1.5), which catalyses the biotransformation of L-phenylalanine to trans-cinnamic acid and ammonia, was first described in 1961 by Koukol and Conn. Since its discovery, much knowledge has been gathered with reference to the enzyme's catabolic role in microorganisms and its importance in the phenyl propanoid pathway of plants. The 3-dimensional structure of the enzyme has been characterized using X-ray crystallography. This has led to a greater understanding of the mechanism of PAL-catalyzed reactions, including the discovery of a recently described cofactor, 3,5-dihydro-5-methyldiene-4H-imidazol-4-one. In the past 3 decades, PAL has gained considerable significance in several clinical, industrial, and biotechnological applications. The reversal of the normal physiological reaction can be effectively employed in the production of optically pure L-phenylalanine, which is a precursor of the noncalorific sweetener aspartame (L-phenylalanyl-L-aspartyl methyl ester). The enzyme's natural ability to break down L-phenylalanine makes PAL a reliable treatment for the genetic condition phenylketonuria. In this mini-review, we discuss prominent details relating to the physiological role of PAL, the mechanism of catalysis, methods of determination and purification, enzyme kinetics, and enzyme activity in nonaqueous media. Two topics of current study on PAL, molecular biology and crystal structure, are also discussed.", "publicationTitle": "Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire", "publisher": "", "place": "", "date": "Jun 2007", "volume": "85", "issue": "3", "section": "", "partNumber": "", "partTitle": "", "pages": "273-282", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Biochem. 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