[ { "key": "F3VJQ6CH", "version": 2, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/F3VJQ6CH", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/F3VJQ6CH", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/41409/items/JSTPDZUB", "type": "application/json" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } } }, "data": { "key": "F3VJQ6CH", "version": 2, "parentItem": "JSTPDZUB", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2012-12-02T19:04:25Z", "url": "http://onlinelibrary.wiley.com/doi/10.1111/j.1744-7410.2010.00189.x/abstract", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "abstract.html", "md5": "9d762de8082c92af46bb4c1059d47d5c", "mtime": 1354475066268, "tags": [], "relations": {}, "dateAdded": "2012-12-02T19:04:25Z", "dateModified": "2012-12-02T19:04:25Z" } }, { "key": "JSTPDZUB", "version": 1, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/JSTPDZUB", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/JSTPDZUB", "type": "text/html" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } }, "creatorSummary": "Rieger et al.", "parsedDate": "2010", "numChildren": 1 }, "data": { "key": "JSTPDZUB", "version": 1, "itemType": "journalArticle", "title": "Immunohistochemical analysis and 3D reconstruction of the cephalic nervous system in Chaetognatha: insights into the evolution of an early bilaterian brain?", "creators": [ { "creatorType": "author", "firstName": "Verena", "lastName": "Rieger" }, { "creatorType": "author", "firstName": "Yvan", "lastName": "Perez" }, { "creatorType": "author", "firstName": "Carsten H. G.", "lastName": "Müller" }, { "creatorType": "author", "firstName": "Elisabeth", "lastName": "Lipke" }, { "creatorType": "author", "firstName": "Andy", "lastName": "Sombke" }, { "creatorType": "author", "firstName": "Bill S.", "lastName": "Hansson" }, { "creatorType": "author", "firstName": "Steffen", "lastName": "Harzsch" } ], "abstractNote": "Abstract. We examined the brain architecture in different species of Chaetognatha using immunofluorescence methods with a set of nervous system markers and confocal laser-scan microscopic analysis. These markers include antibodies against synaptic proteins, RFamide-related peptides, and tyrosinated tubulin, as well as a marker of cell nuclei. Furthermore, we present a 3D reconstruction based on histological section series. Our results expand the previous knowledge on neuroanatomy in Chaetognatha. We suggest a structural and functional subdivision of the rather complex chaetognath brain into two domains, a posterior domain that may be primarily involved in the integration of sensory input, and an anterior domain that may be involved in the control of the mouthparts and the anterior part of the digestive system. Immunolocalization of a neuropeptide suggests the presence of an identifiable group of neurons associated with the brain of all species examined here. However, our data also reveal a certain degree of interspecific variation and divergence within the Chaetognatha concerning, for example, the pattern of nerves branching off the brain and the proportional sizes of the various neuropil compartments. We compare our data to brain architecture in various other representatives of Protostomia and Deuterostomia. The chaetognath brain fits within the range of structural variation encountered in protostomian brains, and we cannot find any brain characteristics that would argue in favor of placing chaetognaths outside of the Protostomia. Rather, we see the circumoral arrangement of their cephalic nervous system as an argument that suggests protostome affinities.", "publicationTitle": "Invertebrate Biology", "publisher": "", "place": "", "date": "2010", "volume": "129", "issue": "1", "section": "", "partNumber": "", "partTitle": "", "pages": "77–104", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1111/j.1744-7410.2010.00189.x", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/j.1744-7410.2010.00189.x/abstract", "accessDate": "2012-12-02T19:04:25Z", "PMID": "", "PMCID": "", "ISSN": "1744-7410", "archive": "", "archiveLocation": "", "shortTitle": "Immunohistochemical analysis and 3D reconstruction of the cephalic nervous system in Chaetognatha", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2010, The Authors. Journal compilation © 2010, The American Microscopical Society, Inc.", "extra": "", "tags": [ { "tag": "Bilateria", "type": 1 }, { "tag": "evolution", "type": 1 }, { "tag": "immunohistochemistry", "type": 1 }, { "tag": "neurophylogeny", "type": 1 }, { "tag": "neurotransmitters", "type": 1 } ], "collections": [ "JZX7JRV5" ], "relations": {}, "dateAdded": "2012-12-02T19:04:25Z", "dateModified": "2012-12-02T19:04:25Z" } }, { "key": "TK3VHXI8", "version": 2, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/TK3VHXI8", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/TK3VHXI8", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/41409/items/43RS2HBH", "type": "application/json" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "TK3VHXI8", "version": 2, "parentItem": "43RS2HBH", "itemType": "attachment", "linkMode": "imported_url", "title": "Full Text PDF", "accessDate": "2012-12-02T19:03:13Z", "url": "http://bioinformatics.oxfordjournals.org/content/26/3/403.full.pdf", "note": "", "contentType": "application/pdf", "charset": "", "filename": "Meglécz et al. - 2010 - QDD a user-friendly program to select microsatell.pdf", "md5": "4caa03ea6ff24b33fa46cffb3e4fc6fa", "mtime": 1354474997379, "tags": [], "relations": {}, "dateAdded": "2012-12-02T19:03:13Z", "dateModified": "2012-12-02T19:03:17Z" } }, { "key": "USRF4Q3F", "version": 2, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/USRF4Q3F", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/USRF4Q3F", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/41409/items/43RS2HBH", "type": "application/json" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } } }, "data": { "key": "USRF4Q3F", "version": 2, "parentItem": "43RS2HBH", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2012-12-02T19:03:13Z", "url": "http://bioinformatics.oxfordjournals.org/content/26/3/403.long", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "403.html", "md5": "328726c4c31454e31081818a01db8091", "mtime": 1354474994383, "tags": [], "relations": {}, "dateAdded": "2012-12-02T19:03:13Z", "dateModified": "2012-12-02T19:03:13Z" } }, { "key": "43RS2HBH", "version": 1, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/43RS2HBH", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/43RS2HBH", "type": "text/html" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } }, "creatorSummary": "Meglécz et al.", "parsedDate": "2010-02-01", "numChildren": 2 }, "data": { "key": "43RS2HBH", "version": 1, "itemType": "journalArticle", "title": "QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects", "creators": [ { "creatorType": "author", "firstName": "Emese", "lastName": "Meglécz" }, { "creatorType": "author", "firstName": "Caroline", "lastName": "Costedoat" }, { "creatorType": "author", "firstName": "Vincent", "lastName": "Dubut" }, { "creatorType": "author", "firstName": "André", "lastName": "Gilles" }, { "creatorType": "author", "firstName": "Thibaut", "lastName": "Malausa" }, { "creatorType": "author", "firstName": "Nicolas", "lastName": "Pech" }, { "creatorType": "author", "firstName": "Jean-François", "lastName": "Martin" } ], "abstractNote": "Summary: QDD is an open access program providing a user-friendly tool for microsatellite detection and primer design from large sets of DNA sequences. The program is designed to deal with all steps of treatment of raw sequences obtained from pyrosequencing of enriched DNA libraries, but it is also applicable to data obtained through other sequencing methods, using FASTA files as input. The following tasks are completed by QDD: tag sorting, adapter/vector removal, elimination of redundant sequences, detection of possible genomic multicopies (duplicated loci or transposable elements), stringent selection of target microsatellites and customizable primer design. It can treat up to one million sequences of a few hundred base pairs in the tag-sorting step, and up to 50 000 sequences in a single input file for the steps involving estimation of sequence similarity.\nAvailability: QDD is freely available under the GPL licence for Windows and Linux from the following web site: http://www.univ-provence.fr/gsite/Local/egee/dir/meglecz/QDD.html\nContact: emese.meglecz@univ-provence.fr\nSupplementary information: Supplementary data are available at Bioinformatics online.", "publicationTitle": "Bioinformatics", "publisher": "", "place": "", "date": "02/01/2010", "volume": "26", "issue": "3", "section": "", "partNumber": "", "partTitle": "", "pages": "403-404", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Bioinformatics", "DOI": "10.1093/bioinformatics/btp670", "citationKey": "", "url": "http://bioinformatics.oxfordjournals.org/content/26/3/403", "accessDate": "2012-12-02T19:03:13Z", "PMID": "", "PMCID": "", "ISSN": "1367-4803, 1460-2059", "archive": "", "archiveLocation": "", "shortTitle": "QDD", "language": "en", "libraryCatalog": "bioinformatics.oxfordjournals.org", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "JZX7JRV5" ], "relations": {}, "dateAdded": "2012-12-02T19:03:13Z", "dateModified": "2012-12-02T19:03:13Z" } }, { "key": "3W8ST3IS", "version": 2, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/3W8ST3IS", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/3W8ST3IS", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/41409/items/FFF3J4MZ", "type": "application/json" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } } }, "data": { "key": "3W8ST3IS", "version": 2, "parentItem": "FFF3J4MZ", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2012-12-02T19:02:19Z", "url": "http://www.biomedcentral.com/1471-2164/11/560", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "560.html", "md5": "7acd13e641a745eb6c4836583889a480", "mtime": 1354474940969, "tags": [], "relations": {}, "dateAdded": "2012-12-02T19:02:19Z", "dateModified": "2012-12-02T19:02:19Z" } }, { "key": "FFF3J4MZ", "version": 1, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/FFF3J4MZ", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/FFF3J4MZ", "type": "text/html" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } }, "creatorSummary": "Martin et al.", "parsedDate": "2010-10-12", "numChildren": 1 }, "data": { "key": "FFF3J4MZ", "version": 1, "itemType": "journalArticle", "title": "Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing", "creators": [ { "creatorType": "author", "firstName": "Jean-Francois", "lastName": "Martin" }, { "creatorType": "author", "firstName": "Nicolas", "lastName": "Pech" }, { "creatorType": "author", "firstName": "Emese", "lastName": "Meglécz" }, { "creatorType": "author", "firstName": "Stéphanie", "lastName": "Ferreira" }, { "creatorType": "author", "firstName": "Caroline", "lastName": "Costedoat" }, { "creatorType": "author", "firstName": "Vincent", "lastName": "Dubut" }, { "creatorType": "author", "firstName": "Thibaut", "lastName": "Malausa" }, { "creatorType": "author", "firstName": "André", "lastName": "Gilles" } ], "abstractNote": "Microsatellites are markers of choice in population genetics and genomics, as they provide useful insight into patterns and processes as diverse as genome evolutionary dynamics and demographic processes. The acquisition of microsatellites through multiplex-enriched libraries and 454 GS-FLX Titanium pyrosequencing is a promising new tool for the isolation of new markers in unknown genomes. This approach can also be used to evaluate the extent to which microsatellite-enriched libraries are representative of the genome from which they were isolated. In this study, we deciphered potential discrepancies in microsatellite content recovery for two reference genomes (Apis mellifera and Danio rerio), selected on the basis of their extreme heterogeneity in terms of the proportions and distributions of microsatellites on chromosomes.", "publicationTitle": "BMC Genomics", "publisher": "", "place": "", "date": "2010-10-12", "volume": "11", "issue": "1", "section": "", "partNumber": "", "partTitle": "", "pages": "560", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1186/1471-2164-11-560", "citationKey": "", "url": "http://www.biomedcentral.com/1471-2164/11/560/abstract", "accessDate": "2012-12-02T19:02:19Z", "PMID": "", "PMCID": "", "ISSN": "1471-2164", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "www.biomedcentral.com", "callNumber": "", "rights": "2010 Martin et al; licensee BioMed Central Ltd.", "extra": "", "tags": [], "collections": [ "JZX7JRV5" ], "relations": {}, "dateAdded": "2012-12-02T19:02:19Z", "dateModified": "2012-12-02T19:02:19Z" } }, { "key": "6JR4JXCN", "version": 2, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/6JR4JXCN", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/6JR4JXCN", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/41409/items/KQ2D5ENS", "type": "application/json" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } } }, "data": { "key": "6JR4JXCN", "version": 2, "parentItem": "KQ2D5ENS", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2012-12-02T19:01:41Z", "url": "http://onlinelibrary.wiley.com/doi/10.1111/j.1463-6409.2010.00417.x/abstract", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "abstract.html", "md5": "e435002a08dccb39394660b25b99b03b", "mtime": 1354474902242, "tags": [], "relations": {}, "dateAdded": "2012-12-02T19:01:41Z", "dateModified": "2012-12-02T19:01:41Z" } }, { "key": "KQ2D5ENS", "version": 1, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/KQ2D5ENS", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/KQ2D5ENS", "type": "text/html" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } }, "creatorSummary": "Gilles et al.", "parsedDate": "2010", "numChildren": 1 }, "data": { "key": "KQ2D5ENS", "version": 1, "itemType": "journalArticle", "title": "Speciation pattern of Telestes souffia complex (Teleostei, Cyprinidae) in Europe using morphological and molecular markers*", "creators": [ { "creatorType": "author", "firstName": "André", "lastName": "Gilles" }, { "creatorType": "author", "firstName": "Caroline", "lastName": "Costedoat" }, { "creatorType": "author", "firstName": "Bernard", "lastName": "Barascud" }, { "creatorType": "author", "firstName": "Adrien", "lastName": "Voisin" }, { "creatorType": "author", "firstName": "Petru", "lastName": "Banarescu" }, { "creatorType": "author", "firstName": "Pier Giorgio", "lastName": "Bianco" }, { "creatorType": "author", "firstName": "Panos Stavros", "lastName": "Economidis" }, { "creatorType": "author", "firstName": "Drago", "lastName": "Marić" }, { "creatorType": "author", "firstName": "Rémi", "lastName": "Chappaz" } ], "abstractNote": "Gilles, A., Costedoat, C., Barascud, B., Voisin, A., Banarescu, P., Bianco, P. G., Economidis, P. S., Marić, D. & Chappaz, R. (2010). Speciation pattern of Telestes souffia complex (Teleostei, Cyprinidae) in Europe using morphological and molecular markers.—Zoologica Scripta, 39, 225–242.It is notorious that many species boundaries are erroneously defined. When molecular markers are used, misleading evidence can notably be due to the characteristics inherent to mitochondrial DNA and quantity of markers used but also because of a limited range distribution sampling. European cyprinids biodiversity inventory is still an ongoing task and surprising phylogeographic patterns and phylogenetic relationships are still recovered on account of methodological evolution. This is particularly obvious for the Telestes souffia complex. This species occurs in a fragmented range and species boundaries is greatly debated. In this study, we provide an updated delimitation of the different evolutionary entities constituting this T. souffia complex and propose a taxonomic revision. Morphological and molecular analyses were carried out on 520 specimens coming from 19 localities representing the complete geographical range of this species complex and six related sister species that could potentially interact with it (outgroup ‘sensu lato’). Phylogenetic reconstructions and multivariate analyses demonstrated that the T. souffia complex is constituted of at least three species (T. souffia, Telestes muticellus and Telestes montenigrinus). Data also suggested that T. souffia comprises three subspecies (T. s. souffia, T. s. agassii; T. s. rysela). We also confirm the splitting of the T. souffia sister species Telestes pleurobipunctatus into two distinct species. The Peloponnesian lineage will be referred as Telestes alfiensis and the continental lineage as T. pleurobipunctatus. Morphological and molecular markers displayed some degree of incongruence within T. souffia suggesting that introgressive hybridization has played a role in the evolution of the Telestes genus. However, discordance among data sets could also result from heterogeneous rate of morphological evolution. Finally, we demonstrated that T. muticellus was implicated in two categories of hybridization: an inter-species hybridization (between T. muticellus and T. souffia) and an inter-generic hybridization (between T. muticellus and Squalius lucumonis), a phenomenon rarely observed for a same species.", "publicationTitle": "Zoologica Scripta", "publisher": "", "place": "", "date": "2010", "volume": "39", "issue": "3", "section": "", "partNumber": "", "partTitle": "", "pages": "225–242", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1111/j.1463-6409.2010.00417.x", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/j.1463-6409.2010.00417.x/abstract", "accessDate": "2012-12-02T19:01:41Z", "PMID": "", "PMCID": "", "ISSN": "1463-6409", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2010 The Authors. 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The species now is reduced to a series of isolated populations in the northern half of the North Island and Great Barrier Island. We have used mitochondrial and nuclear sequence data to examine the genetic affinities of extant populations of L. hochstetteri. Phylogenetic reconstructions reveal that populations are highly structured. Each of the geographically isolated populations harbours independent mtDNA lineages as well as different degrees of nuDNA differentiation. Moreover, molecular dating reveals that this structure originated in the early Pleistocene. This pattern of genetic structure likely results from unfavourable climatic conditions during the Pleistocene combined with the low dispersal ability of the species. Isolated populations in forested refugia existed even in the southern part of the distribution of the species during glacial cycles. Previously published variation in chromosome numbers and isozyme data are consistent with the new evidence. 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The species now is reduced to a series of isolated populations in the northern half of the North Island and Great Barrier Island. We have used mitochondrial and nuclear sequence data to examine the genetic affinities of extant populations of L. hochstetteri. Phylogenetic reconstructions reveal that populations are highly structured. Each of the geographically isolated populations harbours independent mtDNA lineages as well as different degrees of nuDNA differentiation. Moreover, molecular dating reveals that this structure originated in the early Pleistocene. This pattern of genetic structure likely results from unfavourable climatic conditions during the Pleistocene combined with the low dispersal ability of the species. Isolated populations in forested refugia existed even in the southern part of the distribution of the species during glacial cycles. Previously published variation in chromosome numbers and isozyme data are consistent with the new evidence. 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The species now is reduced to a series of isolated populations in the northern half of the North Island and Great Barrier Island. We have used mitochondrial and nuclear sequence data to examine the genetic affinities of extant populations of L. hochstetteri. Phylogenetic reconstructions reveal that populations are highly structured. Each of the geographically isolated populations harbours independent mtDNA lineages as well as different degrees of nuDNA differentiation. Moreover, molecular dating reveals that this structure originated in the early Pleistocene. This pattern of genetic structure likely results from unfavourable climatic conditions during the Pleistocene combined with the low dispersal ability of the species. Isolated populations in forested refugia existed even in the southern part of the distribution of the species during glacial cycles. Previously published variation in chromosome numbers and isozyme data are consistent with the new evidence. We identified 13 evolutionary significant units (ESUs) that should serve as the focus for future management and conservation of this species.", "publicationTitle": "Conservation Genetics", "publisher": "", "place": "", "date": "2010/06/01", "volume": "11", "issue": "3", "section": "", "partNumber": "", "partTitle": "", "pages": "907-919", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Conserv Genet", "DOI": "10.1007/s10592-009-9935-8", "citationKey": "", "url": "http://link.springer.com/article/10.1007/s10592-009-9935-8", "accessDate": "2012-12-02T19:00:37Z", "PMID": "", "PMCID": "", "ISSN": "1566-0621, 1572-9737", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "link.springer.com", "callNumber": "", "rights": "", "extra": "", "tags": [ { "tag": "Animal Anatomy / Morphology / Histology", "type": 1 }, { "tag": "Conservation", "type": 1 }, { "tag": "Conservation Biology/Ecology", "type": 1 }, { "tag": "Evolutionary Biology", "type": 1 }, { "tag": "Leiopelma", "type": 1 }, { "tag": "New Zealand", "type": 1 }, { "tag": "Plant Sciences", "type": 1 }, { "tag": "Pleistocene", "type": 1 }, { "tag": "phylogeography", "type": 1 } ], "collections": [ "JZX7JRV5" ], "relations": {}, "dateAdded": "2012-12-02T19:00:37Z", "dateModified": "2012-12-02T19:00:37Z" } }, { "key": "MFDB85IB", "version": 2, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/MFDB85IB", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/MFDB85IB", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/41409/items/M66DP5SZ", "type": "application/json" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } } }, "data": { "key": "MFDB85IB", "version": 2, "parentItem": "M66DP5SZ", "itemType": "attachment", "linkMode": "imported_url", "title": "ScienceDirect Snapshot", "accessDate": "2012-12-02T18:59:46Z", "url": "http://www.sciencedirect.com/science/article/pii/S0006320710001011", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "S0006320710001011.html", "md5": "80649721b3e3bdb6950ff747d381a60f", "mtime": 1354474786833, "tags": [], "relations": {}, "dateAdded": "2012-12-02T18:59:46Z", "dateModified": "2012-12-02T18:59:46Z" } }, { "key": "M66DP5SZ", "version": 1, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/M66DP5SZ", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/M66DP5SZ", "type": "text/html" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } }, "creatorSummary": "Fouquet et al.", "parsedDate": "2010", "numChildren": 1 }, "data": { "key": "M66DP5SZ", "version": 1, "itemType": "journalArticle", "title": "Using ecological niche modelling to infer past, present and future environmental suitability for Leiopelma hochstetteri, an endangered New Zealand native frog", "creators": [ { "creatorType": "author", "firstName": "Antoine", "lastName": "Fouquet" }, { "creatorType": "author", "firstName": "Gentile Francesco", "lastName": "Ficetola" }, { "creatorType": "author", "firstName": "Amanda", "lastName": "Haigh" }, { "creatorType": "author", "firstName": "Neil", "lastName": "Gemmell" } ], "abstractNote": "Leiopelma hochstetteri is an endangered New Zealand frog now confined to isolated populations scattered across the North Island. A better understanding of its past, current and predicted future environmental suitability will contribute to its conservation which is in jeopardy due to human activities, feral predators, disease and climate change. Here we use ecological niche modelling with all known occurrence data (N = 1708) and six determinant environmental variables to elucidate current, pre-human and future environmental suitability of this species. Comparison among independent runs, subfossil records and a clamping method allow validation of models. Many areas identified as currently suitable do not host any known populations. This apparent discrepancy could be explained by several non exclusive hypotheses: the areas have not been adequately surveyed and undiscovered populations still remain, the model is over simplistic; the species’ sensitivity to fragmentation and small population size; biotic interactions; historical events. An additional outcome is that apparently suitable, but frog-less areas could be targeted for future translocations. Surprisingly, pre-human conditions do not differ markedly highlighting the possibility that the range of the species was broadly fragmented before human arrival. Nevertheless, some populations, particularly on the west of the North Island may have disappeared as a result of human mediated habitat modification. Future conditions are marked with higher temperatures, which are predicted to be favourable to the species. However, such virtual gain in suitable range will probably not benefit the species given the highly fragmented nature of existing habitat and the low dispersal ability of this species.", "publicationTitle": "Biological Conservation", "publisher": "", "place": "", "date": "juin 2010", "volume": "143", "issue": "6", "section": "", "partNumber": "", "partTitle": "", "pages": "1375-1384", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Biological Conservation", "DOI": "10.1016/j.biocon.2010.03.012", "citationKey": "", "url": "http://www.sciencedirect.com/science/article/pii/S0006320710001011", "accessDate": "2012-12-02T18:59:46Z", "PMID": "", "PMCID": "", "ISSN": "0006-3207", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "ScienceDirect", "callNumber": "", "rights": "", "extra": "", "tags": [ { "tag": "Conservation", "type": 1 }, { "tag": "Leiopelma", "type": 1 }, { "tag": "New Zealand", "type": 1 }, { "tag": "Niche modelling", "type": 1 }, { "tag": "Pepeketua", "type": 1 }, { "tag": "climate change", "type": 1 } ], "collections": [ "JZX7JRV5" ], "relations": {}, "dateAdded": "2012-12-02T18:59:46Z", "dateModified": "2012-12-02T18:59:46Z" } }, { "key": "DFJSHD4D", "version": 2, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/DFJSHD4D", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/DFJSHD4D", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/41409/items/UCT6CCI9", "type": "application/json" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } } }, "data": { "key": "DFJSHD4D", "version": 2, "parentItem": "UCT6CCI9", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2012-12-02T18:58:46Z", "url": "http://www.biomedcentral.com/1756-0500/3/135", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "135.html", "md5": "697775017fb692df08cc7c978e9025cc", "mtime": 1354474727893, "tags": [], "relations": {}, "dateAdded": "2012-12-02T18:58:46Z", "dateModified": "2012-12-02T18:58:46Z" } }, { "key": "UCT6CCI9", "version": 1, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/UCT6CCI9", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/UCT6CCI9", "type": "text/html" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } }, "creatorSummary": "Dubut et al.", "parsedDate": "2010-05-17", "numChildren": 1 }, "data": { "key": "UCT6CCI9", "version": 1, "itemType": "journalArticle", "title": "Cross-species amplification of 41 microsatellites in European cyprinids: A tool for evolutionary, population genetics and hybridization studies", "creators": [ { "creatorType": "author", "firstName": "Vincent", "lastName": "Dubut" }, { "creatorType": "author", "firstName": "Melthide", "lastName": "Sinama" }, { "creatorType": "author", "firstName": "Jean-François", "lastName": "Martin" }, { "creatorType": "author", "firstName": "Emese", "lastName": "Meglécz" }, { "creatorType": "author", "firstName": "Juliette", "lastName": "Fernandez" }, { "creatorType": "author", "firstName": "Rémi", "lastName": "Chappaz" }, { "creatorType": "author", "firstName": "André", "lastName": "Gilles" }, { "creatorType": "author", "firstName": "Caroline", "lastName": "Costedoat" } ], "abstractNote": "Cyprinids display the most abundant and widespread species among the European freshwater Teleostei and are known to hybridize quite commonly. Nevertheless, a limited number of markers for conducting comparative differentiation, evolutionary and hybridization dynamics studies are available to date.", "publicationTitle": "BMC Research Notes", "publisher": "", "place": "", "date": "2010-05-17", "volume": "3", "issue": "1", "section": "", "partNumber": "", "partTitle": "", "pages": "135", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1186/1756-0500-3-135", "citationKey": "", "url": "http://www.biomedcentral.com/1756-0500/3/135/abstract", "accessDate": "2012-12-02T18:58:46Z", "PMID": "", "PMCID": "", "ISSN": "1756-0500", "archive": "", "archiveLocation": "", "shortTitle": "Cross-species amplification of 41 microsatellites in European cyprinids", "language": "en", "libraryCatalog": "www.biomedcentral.com", "callNumber": "", "rights": "2010 Dubut et al; licensee BioMed Central Ltd.", "extra": "", "tags": [], "collections": [ "JZX7JRV5" ], "relations": {}, "dateAdded": "2012-12-02T18:58:46Z", "dateModified": "2012-12-02T18:58:46Z" } }, { "key": "2THK53JJ", "version": 2, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/2THK53JJ", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/2THK53JJ", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/41409/items/GVFBNNHN", "type": "application/json" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } } }, "data": { "key": "2THK53JJ", "version": 2, "parentItem": "GVFBNNHN", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2012-12-02T18:57:56Z", "url": "http://link.springer.com/article/10.1007%2Fs10344-010-0421-x?LI=true", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "10.html", "md5": "566da88494d44dea4c57c939b1539666", "mtime": 1354474677253, "tags": [], "relations": {}, "dateAdded": "2012-12-02T18:57:56Z", "dateModified": "2012-12-02T18:57:56Z" } }, { "key": "GVFBNNHN", "version": 1, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/GVFBNNHN", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/GVFBNNHN", "type": "text/html" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } }, "creatorSummary": "Dubut et al.", "parsedDate": "2010-12-01", "numChildren": 1 }, "data": { "key": "GVFBNNHN", "version": 1, "itemType": "journalArticle", "title": "Development of 55 novel polymorphic microsatellite loci for the critically endangered Zingel asper L. (Actinopterygii: Perciformes: Percidae) and cross-species amplification in five other percids", "creators": [ { "creatorType": "author", "firstName": "Vincent", "lastName": "Dubut" }, { "creatorType": "author", "firstName": "Rémi", "lastName": "Grenier" }, { "creatorType": "author", "firstName": "Emese", "lastName": "Meglécz" }, { "creatorType": "author", "firstName": "Rémi", "lastName": "Chappaz" }, { "creatorType": "author", "firstName": "Caroline", "lastName": "Costedoat" }, { "creatorType": "author", "firstName": "Delphine", "lastName": "Danancher" }, { "creatorType": "author", "firstName": "Stéphane", "lastName": "Descloux" }, { "creatorType": "author", "firstName": "Thibaut", "lastName": "Malausa" }, { "creatorType": "author", "firstName": "Jean-François", "lastName": "Martin" }, { "creatorType": "author", "firstName": "Nicolas", "lastName": "Pech" }, { "creatorType": "author", "firstName": "André", "lastName": "Gilles" } ], "abstractNote": "By combining biotin-enrichment protocol and next generation pyrosequencing, through 454 GS-FLX Titanium technology, 55 polymorphic microsatellites loci with perfect motif were isolated from the Rhone streber (Zingel asper), a critically endangered European fish species. Eight multiplex PCR kits were optimised in order to genotype a total of 58 polymorphic loci, including three previously published loci. The level of genetic diversity was assessed for 68 Z. asper, 30 Sander lucioperca, 33 Perca fluviatilis and four Gymnocephalus schraetzer individuals. Amplification success was also assessed on Romanichthys valsanicola and Zingel streber using single individuals. These markers will be useful to investigate the population structure of the highly fragmented Rhone streber. They represent a powerful tool for conservation issues and evolutionary approaches of this endemic species. Moreover, part of our markers demonstrated applicability to other percid species, allowing for potential applications to fisheries and aquaculture management.", "publicationTitle": "European Journal of Wildlife Research", "publisher": "", "place": "", "date": "2010/12/01", "volume": "56", "issue": "6", "section": "", "partNumber": "", "partTitle": "", "pages": "931-938", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Eur J Wildl Res", "DOI": "10.1007/s10344-010-0421-x", "citationKey": "", "url": "http://link.springer.com/article/10.1007/s10344-010-0421-x", "accessDate": "2012-12-02T18:57:56Z", "PMID": "", "PMCID": "", "ISSN": "1612-4642, 1439-0574", "archive": "", "archiveLocation": "", "shortTitle": "Development of 55 novel polymorphic microsatellite loci for the critically endangered Zingel asper L. (Actinopterygii", "language": "en", "libraryCatalog": "link.springer.com", "callNumber": "", "rights": "", "extra": "", "tags": [ { "tag": "Animal Ecology", "type": 1 }, { "tag": "Conservation genetics", "type": 1 }, { "tag": "Percidae", "type": 1 }, { "tag": "QDD", "type": 1 }, { "tag": "STRs", "type": 1 }, { "tag": "Zoology", "type": 1 }, { "tag": "enriched library", "type": 1 }, { "tag": "pyrosequencing", "type": 1 } ], "collections": [ "JZX7JRV5" ], "relations": {}, "dateAdded": "2012-12-02T18:57:56Z", "dateModified": "2012-12-02T18:57:56Z" } }, { "key": "J363WGXI", "version": 2, "library": { "type": "group", "id": 41409, "name": "imep_ege", "links": { "alternate": { "href": "https://www.zotero.org/groups/imep_ege", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/41409/items/J363WGXI", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/imep_ege/items/J363WGXI", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/41409/items/DX88D2AD", "type": "application/json" } }, "meta": { "createdByUser": { "id": 555959, "username": "meglecz", "name": "", "links": { "alternate": { "href": "https://www.zotero.org/meglecz", "type": "text/html" } } } }, "data": { "key": "J363WGXI", "version": 2, "parentItem": "DX88D2AD", "itemType": "attachment", "linkMode": "imported_url", "title": "Snapshot", "accessDate": "2012-12-02T18:57:11Z", "url": "http://onlinelibrary.wiley.com/doi/10.1111/j.1755-0998.2009.02795.x/abstract", "note": "", "contentType": "text/html", "charset": "utf-8", "filename": "abstract.html", "md5": "93a9899d42faf57b8d6f76e2002bd736", "mtime": 1354474631747, "tags": [], "relations": {}, "dateAdded": "2012-12-02T18:57:11Z", "dateModified": "2012-12-02T18:57:11Z" } } ]