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[], "relations": {}, "dateAdded": "2013-10-23T04:11:52Z", "dateModified": "2013-10-23T04:11:52Z" } }, { "key": "SB7H98EQ", "version": 3, "library": { "type": "group", "id": 226562, "name": "Bikura", "links": { "alternate": { "href": "https://www.zotero.org/groups/bikura", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/226562/items/SB7H98EQ", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/bikura/items/SB7H98EQ", "type": "text/html" } }, "meta": { "createdByUser": { "id": 11415, "username": "PaulB", "name": "Paul Ben Ishai", "links": { "alternate": { "href": "https://www.zotero.org/paulb", "type": "text/html" } } }, "creatorSummary": "Kremer and Schönhals", "parsedDate": "2002-12-16", "numChildren": 1 }, "data": { "key": "SB7H98EQ", "version": 3, "itemType": "book", "title": "Broadband Dielectric Spectroscopy", "creators": [ { "creatorType": "author", "firstName": "Friedrich", "lastName": "Kremer" }, { 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"dateModified": "2013-10-22T09:53:01Z" } }, { "key": "IWENIQJ8", "version": 2, "library": { "type": "group", "id": 226562, "name": "Bikura", "links": { "alternate": { "href": "https://www.zotero.org/groups/bikura", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/226562/items/IWENIQJ8", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/bikura/items/IWENIQJ8", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/226562/items/93B3A4M8", "type": "application/json" } }, "meta": { "createdByUser": { "id": 11415, "username": "PaulB", "name": "Paul Ben Ishai", "links": { "alternate": { "href": "https://www.zotero.org/paulb", "type": "text/html" } } } }, "data": { "key": "IWENIQJ8", "version": 2, "parentItem": "93B3A4M8", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2013-10-21T12:02:04Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/23148272", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2013-10-22T09:53:01Z", "dateModified": "2013-10-22T09:53:01Z" } }, { "key": "PQ7DXRHV", "version": 2, "library": { "type": "group", "id": 226562, "name": "Bikura", "links": { "alternate": { "href": "https://www.zotero.org/groups/bikura", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/226562/items/PQ7DXRHV", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/bikura/items/PQ7DXRHV", "type": "text/html" } }, "meta": { "createdByUser": { "id": 11415, "username": "PaulB", "name": "Paul Ben Ishai", "links": { "alternate": { "href": "https://www.zotero.org/paulb", "type": "text/html" } } }, "creatorSummary": "Rochaix", "parsedDate": "2013-06-01", "numChildren": 1 }, "data": { "key": "PQ7DXRHV", "version": 2, "itemType": "journalArticle", "title": "Redox regulation of thylakoid protein kinases and photosynthetic gene expression", "creators": [ { "creatorType": "author", "firstName": "Jean-David", "lastName": "Rochaix" } ], "abstractNote": "SIGNIFICANCE: Photosynthetic organisms are subjected to frequent changes in their environment that include fluctuations in light quality and quantity, temperature, CO(2) concentration, and nutrient availability. They have evolved complex responses to these changes that allow them to protect themselves against photo-oxidative damage and to optimize their growth under these adverse conditions. In the case of light changes, these acclimatory processes can occur in either the short or the long term and are mainly mediated through the redox state of the plastoquinone pool and the ferredoxin/thioredoxin system.\nRECENT ADVANCES: Short-term responses involve a dynamic reorganization of photosynthetic complexes, and long-term responses (LTRs) modulate the chloroplast and nuclear gene expression in such a way that the levels of the photosystems and their antennae are rebalanced for an optimal photosynthetic performance. These changes are mediated through a complex signaling network with several protein kinases and phosphatases that are conserved in land plants and algae. The phosphorylation status of the light-harvesting proteins of photosystem II and its core proteins is mainly determined by two complementary kinase-phosphatase pairs corresponding to STN7/PPH1 and STN8/PBCP, respectively.\nCRITICAL ISSUES: The activity of the Stt7 kinase is principally regulated by the redox state of the plastoquinone pool, which in turn depends on the light irradiance, ambient CO(2) concentration, and cellular energy status. In addition, this kinase is also involved in the LTR.\nFUTURE DIRECTIONS: Other chloroplast kinases modulate the activity of the plastid transcriptional machinery, but the global signaling network that connects all of the identified kinases and phosphatases is still largely unknown.", "publicationTitle": "Antioxidants & redox signaling", "publisher": "", "place": "", "date": "Jun 1, 2013", "volume": "18", "issue": "16", "section": "", "partNumber": "", "partTitle": "", "pages": "2184-2201", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Antioxid. Redox Signal.", "DOI": "10.1089/ars.2012.5110", "citationKey": "", "url": "", "accessDate": "", "PMID": "", "PMCID": "", "ISSN": "1557-7716", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "eng", "libraryCatalog": "NCBI PubMed", "callNumber": "", "rights": "", "extra": "PMID: 23339452", "tags": [ { "tag": "Amino Acid Sequence", "type": 1 }, { "tag": "Electron Transport", "type": 1 }, { "tag": "Gene Expression", "type": 1 }, { "tag": "Molecular Sequence Data", "type": 1 }, { "tag": "Oxidation-Reduction", "type": 1 }, { "tag": "Phosphorylation", "type": 1 }, { "tag": "Photosynthesis", "type": 1 }, { "tag": "Plant Proteins", "type": 1 }, { "tag": "Protein Kinases", "type": 1 }, { "tag": "Sequence Homology, Amino Acid", "type": 1 }, { "tag": "Thylakoids", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2013-10-22T09:53:01Z", "dateModified": "2013-10-22T09:53:01Z" } }, { "key": "C9H3B4D7", "version": 2, "library": { "type": "group", "id": 226562, "name": "Bikura", "links": { "alternate": { "href": "https://www.zotero.org/groups/bikura", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/226562/items/C9H3B4D7", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/bikura/items/C9H3B4D7", "type": "text/html" } }, "meta": { "createdByUser": { "id": 11415, "username": "PaulB", "name": "Paul Ben Ishai", "links": { "alternate": { "href": "https://www.zotero.org/paulb", "type": "text/html" } } }, "creatorSummary": "Li et al.", "parsedDate": "2009", "numChildren": 1 }, "data": { "key": "C9H3B4D7", "version": 2, "itemType": "journalArticle", "title": "Sensing and responding to excess light", "creators": [ { "creatorType": "author", "firstName": "Zhirong", "lastName": "Li" }, { "creatorType": "author", "firstName": "Setsuko", "lastName": "Wakao" }, { "creatorType": "author", "firstName": "Beat B", "lastName": "Fischer" }, { "creatorType": "author", "firstName": "Krishna K", "lastName": "Niyogi" } ], "abstractNote": "Plants and algae often absorb too much light-more than they can actually use in photosynthesis. To prevent photo-oxidative damage and to acclimate to changes in their environment, photosynthetic organisms have evolved direct and indirect mechanisms for sensing and responding to excess light. Photoreceptors such as phototropin, neochrome, and cryptochrome can sense excess light directly and relay signals for chloroplast movement and gene expression responses. Indirect sensing of excess light through biochemical and metabolic signals can be transduced into local responses within chloroplasts, into changes in nuclear gene expression via retrograde signaling pathways, or even into systemic responses, all of which are associated with photoacclimation.", "publicationTitle": "Annual review of plant biology", "publisher": "", "place": "", "date": "2009", "volume": "60", "issue": "", "section": "", "partNumber": "", "partTitle": "", "pages": "239-260", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Annu Rev Plant Biol", "DOI": "10.1146/annurev.arplant.58.032806.103844", "citationKey": "", "url": "", "accessDate": "", "PMID": "", "PMCID": "", "ISSN": "1545-2123", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "eng", "libraryCatalog": "NCBI PubMed", "callNumber": "", "rights": "", "extra": "PMID: 19575582", "tags": [ { "tag": "Hydrogen-Ion Concentration", "type": 1 }, { "tag": "Light", "type": 1 }, { "tag": "Oxidation-Reduction", "type": 1 }, { "tag": "Photoreceptors, Plant", "type": 1 }, { "tag": "Photosynthesis", "type": 1 }, { "tag": "Plant Physiological Phenomena", "type": 1 }, { "tag": "Plants", "type": 1 }, { "tag": "Reactive Oxygen Species", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2013-10-22T09:53:01Z", "dateModified": "2013-10-22T09:53:01Z" } }, { "key": "D69NG5QF", "version": 2, "library": { "type": "group", "id": 226562, "name": "Bikura", "links": { "alternate": { "href": "https://www.zotero.org/groups/bikura", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/226562/items/D69NG5QF", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/bikura/items/D69NG5QF", "type": "text/html" } }, "meta": { "createdByUser": { "id": 11415, "username": "PaulB", "name": "Paul Ben Ishai", "links": { "alternate": { "href": "https://www.zotero.org/paulb", "type": "text/html" } } }, "creatorSummary": "Kamen", "parsedDate": "1963", "numChildren": 1 }, "data": { "key": "D69NG5QF", "version": 2, "itemType": "book", "title": "Primary Processes in Photosynthesis", "creators": [ { "creatorType": "author", "firstName": "Martin David", "lastName": "Kamen" } ], "abstractNote": "The natural history of photosynthesis; The photosynthetic apparatus; The era of radiation physics; The era of photochemistry.", "series": "", "seriesNumber": "", "volume": "", "numberOfVolumes": "", "edition": "", "date": "1963", "publisher": "Academic Press", "place": "", "originalDate": "", "originalPublisher": "", "originalPlace": "", "format": "", "numPages": "206", "ISBN": "", "DOI": "", "citationKey": "", "url": "", "accessDate": "", "ISSN": "", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "Google Books", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [], "relations": {}, "dateAdded": "2013-10-22T09:53:01Z", "dateModified": "2013-10-22T09:53:01Z" } }, { "key": "TCJF9XMR", "version": 2, "library": { "type": "group", "id": 226562, "name": "Bikura", "links": { "alternate": { "href": "https://www.zotero.org/groups/bikura", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/226562/items/TCJF9XMR", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/bikura/items/TCJF9XMR", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/226562/items/NCDXNPXP", "type": "application/json" } }, "meta": { "createdByUser": { "id": 11415, "username": "PaulB", "name": "Paul Ben Ishai", "links": { "alternate": { "href": "https://www.zotero.org/paulb", "type": "text/html" } } } }, "data": { "key": "TCJF9XMR", "version": 2, "parentItem": "NCDXNPXP", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2013-10-21T12:01:31Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/23148273", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2013-10-22T09:53:01Z", "dateModified": "2013-10-22T09:53:01Z" } }, { "key": "NCDXNPXP", "version": 2, "library": { "type": "group", "id": 226562, "name": "Bikura", "links": { "alternate": { "href": "https://www.zotero.org/groups/bikura", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/226562/items/NCDXNPXP", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/bikura/items/NCDXNPXP", "type": "text/html" } }, "meta": { "createdByUser": { "id": 11415, "username": "PaulB", "name": "Paul Ben Ishai", "links": { "alternate": { "href": "https://www.zotero.org/paulb", "type": "text/html" } } }, "creatorSummary": "Rochaix et al.", "parsedDate": "2012-12-19", "numChildren": 1 }, "data": { "key": "NCDXNPXP", "version": 2, "itemType": "journalArticle", "title": "Protein kinases and phosphatases involved in the acclimation of the photosynthetic apparatus to a changing light environment", "creators": [ { "creatorType": "author", "firstName": "Jean-David", "lastName": "Rochaix" }, { "creatorType": "author", "firstName": "Sylvain", "lastName": "Lemeille" }, { "creatorType": "author", "firstName": "Alexey", "lastName": "Shapiguzov" }, { "creatorType": "author", "firstName": "Iga", "lastName": "Samol" }, { "creatorType": "author", "firstName": "Geoffrey", "lastName": "Fucile" }, { "creatorType": "author", "firstName": "Adrian", "lastName": "Willig" }, { "creatorType": "author", "firstName": "Michel", "lastName": "Goldschmidt-Clermont" } ], "abstractNote": "Photosynthetic organisms are subjected to frequent changes in light quality and quantity and need to respond accordingly. These acclimatory processes are mediated to a large extent through thylakoid protein phosphorylation. Recently, two major thylakoid protein kinases have been identified and characterized. The Stt7/STN7 kinase is mainly involved in the phosphorylation of the LHCII antenna proteins and is required for state transitions. It is firmly associated with the cytochrome b(6)f complex, and its activity is regulated by the redox state of the plastoquinone pool. The other kinase, Stl1/STN8, is responsible for the phosphorylation of the PSII core proteins. Using a reverse genetics approach, we have recently identified the chloroplast PPH1/TAP38 and PBPC protein phosphatases, which counteract the activity of STN7 and STN8 kinases, respectively. They belong to the PP2C-type phosphatase family and are conserved in land plants and algae. The picture that emerges from these studies is that of a complex regulatory network of chloroplast protein kinases and phosphatases that is involved in light acclimation, in maintenance of the plastoquinone redox poise under fluctuating light and in the adjustment to metabolic needs.", "publicationTitle": "Philosophical transactions of the Royal Society of London. Series B, Biological sciences", "publisher": "", "place": "", "date": "Dec 19, 2012", "volume": "367", "issue": "1608", "section": "", "partNumber": "", "partTitle": "", "pages": "3466-3474", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Philos. Trans. R. Soc. Lond., B, Biol. Sci.", "DOI": "10.1098/rstb.2012.0064", "citationKey": "", "url": "", "accessDate": "", "PMID": "", "PMCID": "", "ISSN": "1471-2970", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "eng", "libraryCatalog": "NCBI PubMed", "callNumber": "", "rights": "", "extra": "PMID: 23148273", "tags": [ { "tag": "Acclimatization", "type": 1 }, { "tag": "Amino Acid Sequence", "type": 1 }, { "tag": "Arabidopsis", "type": 1 }, { "tag": "Arabidopsis Proteins", "type": 1 }, { "tag": "Chlamydomonas reinhardtii", "type": 1 }, { "tag": "Chloroplasts", "type": 1 }, { "tag": "Environment", "type": 1 }, { "tag": "Light", "type": 1 }, { "tag": "Light-Harvesting Protein Complexes", "type": 1 }, { "tag": "Molecular Sequence Data", "type": 1 }, { "tag": "Oxidation-Reduction", "type": 1 }, { "tag": "Phosphoprotein Phosphatases", "type": 1 }, { "tag": "Phosphorylation", "type": 1 }, { "tag": "Photosynthesis", "type": 1 }, { "tag": "Photosystem II Protein Complex", "type": 1 }, { "tag": "Plastoquinone", "type": 1 }, { "tag": "Protein Kinases", "type": 1 }, { "tag": "Protein-Serine-Threonine Kinases", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2013-10-22T09:53:01Z", "dateModified": "2013-10-22T09:53:01Z" } }, { "key": "93B3A4M8", "version": 2, "library": { "type": "group", "id": 226562, "name": "Bikura", "links": { "alternate": { "href": "https://www.zotero.org/groups/bikura", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/226562/items/93B3A4M8", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/bikura/items/93B3A4M8", "type": "text/html" } }, "meta": { "createdByUser": { "id": 11415, "username": "PaulB", "name": "Paul Ben Ishai", "links": { "alternate": { "href": "https://www.zotero.org/paulb", "type": "text/html" } } }, "creatorSummary": "Horton", "parsedDate": "2012-12-19", "numChildren": 1 }, "data": { "key": "93B3A4M8", "version": 2, "itemType": "journalArticle", "title": "Optimization of light harvesting and photoprotection: molecular mechanisms and physiological consequences", "creators": [ { "creatorType": "author", "firstName": "Peter", "lastName": "Horton" } ], "abstractNote": "The distinctive lateral organization of the protein complexes in the thylakoid membrane investigated by Jan Anderson and co-workers is dependent on the balance of various attractive and repulsive forces. Modulation of these forces allows critical physiological regulation of photosynthesis that provides efficient light-harvesting in limiting light but dissipation of excess potentially damaging radiation in saturating light. The light-harvesting complexes (LHCII) are central to this regulation, which is achieved by phosphorylation of stromal residues, protonation on the lumen surface and de-epoxidation of bound violaxanthin. The functional flexibility of LHCII derives from a remarkable pigment composition and configuration that not only allow efficient absorption of light and efficient energy transfer either to photosystem II or photosystem I core complexes, but through subtle configurational changes can also exhibit highly efficient dissipative reactions involving chlorophyll-xanthophyll and/or chlorophyll-chlorophyll interactions. These changes in function are determined at a macroscopic level by alterations in protein-protein interactions in the thylakoid membrane. The capacity and dynamics of this regulation are tuned to different physiological scenarios by the exact protein and pigment content of the light-harvesting system. Here, the molecular mechanisms involved will be reviewed, and the optimization of the light-harvesting system in different environmental conditions described.", "publicationTitle": "Philosophical transactions of the Royal Society of London. Series B, Biological sciences", "publisher": "", "place": "", "date": "Dec 19, 2012", "volume": "367", "issue": "1608", "section": "", "partNumber": "", "partTitle": "", "pages": "3455-3465", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Philos. Trans. R. Soc. Lond., B, Biol. Sci.", "DOI": "10.1098/rstb.2012.0069", "citationKey": "", "url": "", "accessDate": "", "PMID": "", "PMCID": "", "ISSN": "1471-2970", "archive": "", "archiveLocation": "", "shortTitle": "Optimization of light harvesting and photoprotection", "language": "eng", "libraryCatalog": "NCBI PubMed", "callNumber": "", "rights": "", "extra": "PMID: 23148272", "tags": [ { "tag": "Arabidopsis", "type": 1 }, { "tag": "Chlorophyll", "type": 1 }, { "tag": "Cold Temperature", "type": 1 }, { "tag": "Electron Transport", "type": 1 }, { "tag": "Light-Harvesting Protein Complexes", "type": 1 }, { "tag": "Phosphorylation", "type": 1 }, { "tag": "Photochemical Processes", "type": 1 }, { "tag": "Photosynthesis", "type": 1 }, { "tag": "Photosystem I Protein Complex", "type": 1 }, { "tag": "Photosystem II Protein Complex", "type": 1 }, { "tag": "Protein Interaction Mapping", "type": 1 }, { "tag": "Sunlight", "type": 1 }, { "tag": "Thylakoids", "type": 1 }, { "tag": "Xanthophylls", "type": 1 } ], "collections": [], "relations": {}, "dateAdded": "2013-10-22T09:53:01Z", "dateModified": "2013-10-22T09:53:01Z" } } ]