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[ { "creatorType": "author", "firstName": "Martin", "lastName": "Boeker" }, { "creatorType": "author", "firstName": "Ludger", "lastName": "Jansen" }, { "creatorType": "author", "firstName": "Niels", "lastName": "Grewe" }, { "creatorType": "author", "firstName": "Johannes", "lastName": "Röhl" }, { "creatorType": "author", "firstName": "Daniel", "lastName": "Schober" }, { "creatorType": "author", "firstName": "Djamila", "lastName": "Seddig-Raufie" }, { "creatorType": "author", "firstName": "Stefan", "lastName": "Schulz" } ], "abstractNote": "BackgroundThe importance of ontologies in the biomedical domain is generally recognized. However, their quality is often too poor for large-scale use in critical applications, at least partially due to insufficient training of ontology developers.ObjectiveTo show the efficacy of guideline-based ontology development training on the performance of ontology developers. The hypothesis was that students who received training on top-level ontologies and design patterns perform better than those who only received training in the basic principles of formal ontology engineering.MethodsA curriculum was implemented based on a guideline for ontology design. A randomized controlled trial on the efficacy of this curriculum was performed with 24 students from bioinformatics and related fields. After joint training on the fundamentals of ontology development the students were randomly allocated to two groups. During the intervention, each group received training on different topics in ontology development. In the assessment phase, all students were asked to solve modeling problems on topics taught differentially in the intervention phase. Primary outcome was the similarity of the students’ ontology artefacts compared with gold standard ontologies developed by the authors before the experiment; secondary outcome was the intra-group similarity of group members’ ontologies.ResultsThe experiment showed no significant effect of the guideline-based training on the performance of ontology developers (a) the ontologies developed after specific training were only slightly but not significantly closer to the gold standard ontologies than the ontologies developed without prior specific training; (b) although significant differences for certain ontologies were detected, the intra-group similarity was not consistently influenced in one direction by the differential training.ConclusionMethodologically limited, this study cannot be interpreted as a general failure of a guideline-based approach to ontology development. Further research is needed to increase insight into whether specific development guidelines and practices in ontology design are effective.", "publicationTitle": "PLoS ONE", "publisher": "", "place": "", "date": "mai 7, 2013", "volume": "8", "issue": "5", "section": "", "partNumber": "", "partTitle": "", "pages": "e61425", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "PLoS ONE", "DOI": "10.1371/journal.pone.0061425", "citationKey": "boekerEffectsGuidelineBasedTraining2013", "url": "http://dx.doi.org/10.1371/journal.pone.0061425", "accessDate": "2013-05-23T12:03:58Z", "PMID": "", "PMCID": "", "ISSN": "", "archive": "", "archiveLocation": "", "shortTitle": "Effects of Guideline-Based Training on the Quality of Formal Ontologies", "language": "", "libraryCatalog": "PLoS ONE", "callNumber": "0000", "rights": "", "extra": "", "tags": [], "collections": [ "Q39KQ3MA" ], "relations": {}, "dateAdded": "2013-05-23T12:03:58Z", "dateModified": "2013-05-23T21:58:12Z" } 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"lastModifiedByUser": { "id": 4157, "username": "thibaud", "name": "Thibaud Hulin", "links": { "alternate": { "href": "https://www.zotero.org/thibaud", "type": "text/html" } } }, "numChildren": 0 }, "data": { "key": "3A878BZT", "version": 234, "itemType": "document", "title": "HAL-Inria", "creators": [], "abstractNote": "La recherche de \"web sémantique\" sur HAL-Inri.", "type": "", "date": "", "publisher": "", "place": "", "DOI": "", "citationKey": "HALInria", "url": "http://hal.inria.fr/index.php?action_todo=search&submit=1&s_type=simple&submit=1&f[0]=@*&v[0]=web%20s%C3%A9mantique&orderby=DATEPROD&ascdesc=DESC", "accessDate": "", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "", "callNumber": "0004", "rights": "", "extra": "", "tags": [], "collections": [ "8NA4EIFU" ], "relations": {}, "dateAdded": "2013-05-21T09:44:46Z", "dateModified": "2013-05-21T11:42:44Z" } }, { "key": "WZGE8KS7", "version": 234, "library": { "type": "group", "id": 147999, "name": "SemanticHPST", "links": { "alternate": { "href": "https://www.zotero.org/groups/semantichpst", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/147999/items/WZGE8KS7", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/semantichpst/items/WZGE8KS7", "type": "text/html" } }, "meta": { "createdByUser": { "id": 1240870, "username": "ElodieTrehet", "name": "Elodie Tréhet", "links": { "alternate": { "href": "https://www.zotero.org/elodietrehet", "type": "text/html" } } }, "lastModifiedByUser": { "id": 4157, "username": "thibaud", "name": "Thibaud Hulin", "links": { "alternate": { "href": "https://www.zotero.org/thibaud", "type": "text/html" } } }, "creatorSummary": "Lynch", "parsedDate": "2013-03-22", "numChildren": 2 }, "data": { "key": "WZGE8KS7", "version": 234, "itemType": "journalArticle", "title": "Postscript Ontography: Investigating the production of things, deflating ontology", "creators": [ { "creatorType": "author", "firstName": "Michael", "lastName": "Lynch" } ], "abstractNote": "In this postscript to the special issue of Social Studies of Science on the ‘turn to ontology’ in science and technology studies, I discuss a tension that runs through many of the articles in the issue. This is a tension between adopting a general philosophical ontology and pursuing empirical studies of particular historical and contemporary practices. The general ontology highlights multiplicity and difference and rejects the idea that, for example, an identical disease entity underlies different practical enactments of that disease in different clinical and research circumstances. The empirical approach investigates how particular identities and differences are negotiated and instantiated in specific circumstances. The two approaches are not necessarily incompatible, but the first settles questions of identity and difference through a ‘pre-theoretical decision’, while the second remains open to distinct resolutions of what counts as identity and difference in the practical settings studied. In this postscript, I argue that a commitment to a general philosophical ontology confuses investigations of specific practical ontologies. To avoid such confusion, I recommend ‘ontography’: historical and ethnographic investigations of particular world-making and world-sustaining practices that do not begin by assuming a general picture of the world. Such investigations avoid making sharp distinctions between epistemology and ontology and take a symmetrical approach to concerns about identity and difference.", "publicationTitle": "Social Studies of Science", "publisher": "", "place": "", "date": "2013-03-22", "volume": "", "issue": "", "section": "", "partNumber": "", "partTitle": "", "pages": "", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Social Studies of Science", "DOI": "10.1177/0306312713475925", "citationKey": "lynchPostscriptOntographyInvestigating2013", "url": "http://sss.sagepub.com/content/early/2013/03/22/0306312713475925", "accessDate": "2013-04-25T14:55:28Z", "PMID": "", "PMCID": "", "ISSN": "0306-3127, 1460-3659", "archive": "", "archiveLocation": "", "shortTitle": "Postscript Ontography", "language": "en", "libraryCatalog": "sss.sagepub.com", "callNumber": "0000", "rights": "", "extra": "", "tags": [], "collections": [ "Q39KQ3MA" ], "relations": {}, "dateAdded": "2013-04-25T14:55:28Z", "dateModified": "2013-05-06T07:56:08Z" } }, { "key": "TPVU5ZWG", "version": 234, "library": { "type": "group", "id": 147999, "name": "SemanticHPST", "links": { "alternate": { "href": "https://www.zotero.org/groups/semantichpst", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/147999/items/TPVU5ZWG", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/semantichpst/items/TPVU5ZWG", "type": "text/html" } }, "meta": { "createdByUser": { "id": 1240870, "username": "ElodieTrehet", "name": "Elodie Tréhet", "links": { "alternate": { "href": "https://www.zotero.org/elodietrehet", "type": "text/html" } } }, "lastModifiedByUser": { "id": 4157, "username": "thibaud", "name": "Thibaud Hulin", "links": { "alternate": { "href": "https://www.zotero.org/thibaud", "type": "text/html" } } }, "creatorSummary": "Bitencourt", "parsedDate": "2013", "numChildren": 0 }, "data": { "key": "TPVU5ZWG", "version": 234, "itemType": "thesis", "title": "Um sistema voltado à indexação e recuperação de informação integrado à ontologia", "creators": [ { "creatorType": "author", "firstName": "Leonardo Daitx de", "lastName": "Bitencourt" } ], "abstractNote": "The fast information growing on the Internet as well as on the organizations show challenges, especially when considering the question of how to retrieve relevant content. Many organizations require improved methods of information retrieval taking into account that the information has become essential and its appropriate use is extremely important in competitive scenarios. Beyond that, we can mention the need for evolution of the search engines, whereas in order to meet increasingly complex requirements becomes necessary to use semantics. To make this evolution feasible each document belonging to a particular corpus needs to have its main concepts and its relationships identified and stored in appropriate structures. Among these structures are inverted indexes and ontologies in order to perform textual searches and to make inferences, respectively. In this sense, this work presents a proposition for the integration of Information Retrieval and Ontology areas. For the evaluation of the proposed work it was developed a prototype in which was applied on a sample base containing articles from Ontology area. Aiming to ensure for the user an integrated view, the prototype search for information on two bases (textual index and ontology) in a coordinated way and thus demonstrating more fully the details that compose the context of the search. Analyzing the results obtained from the integration of information it can be concluded that the work has achieved its objectives, since we believe that it is able to provide content that helps users to get a more complete understanding of a particular area of interest.", "thesisType": "", "university": "Universidade Federal de Santa Catarina, Campus Araranguá, Curso de Tecnologias da Informação e Comunicação", "place": "", "date": "2013", "series": "", "seriesNumber": "", "numPages": "", "DOI": "", "ISBN": "", "citationKey": "bitencourtUmSistemaVoltado2013", "url": "http://repositorio.ufsc.br/handle/123456789/99630", "accessDate": "2013-04-25", "ISSN": "", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "", "callNumber": "0000", "rights": "", "extra": "", "tags": [], "collections": [ "Q39KQ3MA" ], "relations": {}, "dateAdded": "2013-04-25T15:03:14Z", "dateModified": "2013-05-06T07:56:07Z" } }, { "key": "T5VKG5RT", "version": 234, "library": { "type": "group", "id": 147999, "name": "SemanticHPST", "links": { "alternate": { "href": "https://www.zotero.org/groups/semantichpst", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/147999/items/T5VKG5RT", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/semantichpst/items/T5VKG5RT", "type": "text/html" } }, "meta": { "createdByUser": { "id": 1240870, "username": "ElodieTrehet", "name": "Elodie Tréhet", "links": { "alternate": { "href": "https://www.zotero.org/elodietrehet", "type": "text/html" } } }, "lastModifiedByUser": { "id": 4157, "username": "thibaud", "name": "Thibaud Hulin", "links": { "alternate": { "href": "https://www.zotero.org/thibaud", "type": "text/html" } } }, "creatorSummary": "Kumar", "parsedDate": "2013-04-07", "numChildren": 1 }, "data": { "key": "T5VKG5RT", "version": 234, "itemType": "journalArticle", "title": "ONTOLOGY: AN ANALYTICAL STUDY", "creators": [ { "creatorType": "author", "firstName": "Ashish", "lastName": "Kumar" } ], "abstractNote": "", "publicationTitle": "International Journal of Information Technology & Computer Sciences Perspectives", "publisher": "", "place": "", "date": "2013-04-07", "volume": "2", "issue": "1", "section": "", "partNumber": "", "partTitle": "", "pages": "146-151", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "IJITCSP", "DOI": "", "citationKey": "kumarONTOLOGYANALYTICALSTUDY2013", "url": "http://pezzottaitejournals.net/index.php/IJITCSP/article/view/430", "accessDate": "", "PMID": "", "PMCID": "", "ISSN": "", "archive": "", "archiveLocation": "", "shortTitle": "ONTOLOGY", "language": "", "libraryCatalog": "", "callNumber": "0000", "rights": "", "extra": "", "tags": [], "collections": [ "Q39KQ3MA" ], "relations": {}, "dateAdded": "2013-04-25T14:50:10Z", "dateModified": "2013-05-06T07:56:06Z" } } ]