[ { "key": "E7BVQBKB", "version": 162, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/E7BVQBKB", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/E7BVQBKB", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Gabora and Steel", "parsedDate": "2017", "numChildren": 0 }, "data": { "key": "E7BVQBKB", "version": 162, "itemType": "journalArticle", "title": "Autocatalytic networks in cognition and the origin of culture", "creators": [ { "creatorType": "author", "firstName": "Liane", "lastName": "Gabora" }, { "creatorType": "author", "firstName": "Mike", "lastName": "Steel" } ], "abstractNote": "", "publicationTitle": "Journal of Theoretical Biology", "publisher": "", "place": "", "date": "10/2017", "volume": "431", "issue": "", "section": "", "partNumber": "", "partTitle": "", "pages": "87-95", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1016/j.jtbi.2017.07.022", "citationKey": "", "url": "http://linkinghub.elsevier.com/retrieve/pii/S0022519317303533", "accessDate": "2017-09-06T09:34:32Z", "PMID": "", "PMCID": "", "ISSN": "00225193", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "CrossRef", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "BPAEPKF5" ], "relations": {}, "dateAdded": "2017-09-06T09:34:32Z", "dateModified": "2017-09-06T09:34:32Z" } }, { "key": "BWFUD3I4", "version": 199, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/BWFUD3I4", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/BWFUD3I4", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Laland et al.", "parsedDate": "2015-08-22", "numChildren": 1 }, "data": { "key": "BWFUD3I4", "version": 199, "itemType": "journalArticle", "title": "The extended evolutionary synthesis: its structure, assumptions and predictions", "creators": [ { "creatorType": "author", "firstName": "Kevin N.", "lastName": "Laland" }, { "creatorType": "author", "firstName": "Tobias", "lastName": "Uller" }, { "creatorType": "author", "firstName": "Marcus W.", "lastName": "Feldman" }, { "creatorType": "author", "firstName": "Kim", "lastName": "Sterelny" }, { "creatorType": "author", "firstName": "Gerd B.", "lastName": "Müller" }, { "creatorType": "author", "firstName": "Armin", "lastName": "Moczek" }, { "creatorType": "author", "firstName": "Eva", "lastName": "Jablonka" }, { "creatorType": "author", "firstName": "John", "lastName": "Odling-Smee" } ], "abstractNote": "Scientific activities take place within the structured sets of ideas and assumptions that define a field and its practices. The conceptual framework of evolutionary biology emerged with the Modern Synthesis in the early twentieth century and has since expanded into a highly successful research program to explore the processes of diversification and adaptation. Nonetheless, the ability of that framework satisfactorily to accommodate the rapid advances in developmental biology, genomics and ecology has been questioned. We review some of these arguments, focusing on literatures (evo-devo, developmental plasticity, inclusive inheritance and niche construction) whose implications for evolution can be interpreted in two ways—one that preserves the internal structure of contemporary evolutionary theory and one that points towards an alternative conceptual framework. The latter, which we label the ‘extended evolutionary synthesis' (EES), retains the fundaments of evolutionary theory, but differs in its emphasis on the role of constructive processes in development and evolution, and reciprocal portrayals of causation. In the EES, developmental processes, operating through developmental bias, inclusive inheritance and niche construction, share responsibility for the direction and rate of evolution, the origin of character variation and organism–environment complementarity. We spell out the structure, core assumptions and novel predictions of the EES, and show how it can be deployed to stimulate and advance research in those fields that study or use evolutionary biology.", "publicationTitle": "Proc. R. Soc. B", "publisher": "", "place": "", "date": "2015/08/22", "volume": "282", "issue": "1813", "section": "", "partNumber": "", "partTitle": "", "pages": "20151019", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Proc. R. Soc. B", "DOI": "10.1098/rspb.2015.1019", "citationKey": "", "url": "http://rspb.royalsocietypublishing.org/content/282/1813/20151019", "accessDate": "2015-08-11T12:07:05Z", "PMID": "26246559", "PMCID": "", "ISSN": "0962-8452, 1471-2954", "archive": "", "archiveLocation": "", "shortTitle": "The extended evolutionary synthesis", "language": "en", "libraryCatalog": "rspb.royalsocietypublishing.org", "callNumber": "", "rights": "© 2015 The Author(s). Published by the Royal Society. All rights reserved.", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-08-11T12:07:05Z", "dateModified": "2015-08-11T12:07:05Z" } }, { "key": "5G3N9K9S", "version": 161, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/5G3N9K9S", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/5G3N9K9S", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/143587/items/BWFUD3I4", "type": "application/json" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } } }, "data": { "key": "5G3N9K9S", "version": 161, "parentItem": "BWFUD3I4", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2015-08-11T12:07:05Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/26246559", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2015-08-11T12:07:05Z", "dateModified": "2015-08-11T12:07:05Z" } }, { "key": "9PSSE4NE", "version": 159, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/9PSSE4NE", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/9PSSE4NE", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Shay et al.", "parsedDate": "2015-01-07", "numChildren": 0 }, "data": { "key": "9PSSE4NE", "version": 159, "itemType": "journalArticle", "title": "The origin and spread of a cooperative replicase in a prebiotic chemical system", "creators": [ { "creatorType": "author", "firstName": "Julie A.", "lastName": "Shay" }, { "creatorType": "author", "firstName": "Christopher", "lastName": "Huynh" }, { "creatorType": "author", "firstName": "Paul G.", "lastName": "Higgs" } ], "abstractNote": "The origin of life requires the emergence of a system of autocatalytic polymers such as RNA. We consider a trans-acting replicase that catalyses replication of a template (either a copy of itself or another sequence). Our model includes alternating plus/minus strand replication where only the plus strand is a catalyst. Prebiotic chemistry generates random sequences and allows for non-catalysed, template-directed synthesis of new strands. These chemical reactions are insufficient to sustain replication, but they provide a background in which the first replicase can arise. In the well-mixed case, the minimum value of the catalytic rate parameter k for which a stable replicating state survives scales as 1/f, where f is the fraction of random sequences that are catalysts. When catalysts are rare (f→0), the replicating state is not stable in for any finite k because the replicases are overrun by parasitic templates already present in the prebiotic system, and by additional parasites created by mutation of the catalyst. In contrast, in 2d spatial simulations, the replicating state is stable for moderate k with appropriate values of the local diffusion constant. We calculate the probability of spread of the replicating state from a single isolated catalyst. This occurs in a parameter range that is narrower than that in which existing replicators are stable. The 2d model uses ‘Two׳s Company’ rules, where two molecules on a site may replicate, but crowding occurs when three molecules are on one site. A mean-field theory is presented which predicts the most important results of the spatial model. Our results emphasize that the origin of replication is a spatially-localized stochastic transition between a ‘dead’ state controlled by prebiotic chemistry and a ‘living’ state controlled by autocatalytic replication.", "publicationTitle": "Journal of Theoretical Biology", "publisher": "", "place": "", "date": "January 7, 2015", "volume": "364", "issue": "", "section": "", "partNumber": "", "partTitle": "", "pages": "249-259", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Journal of Theoretical Biology", "DOI": "10.1016/j.jtbi.2014.09.019", "citationKey": "", "url": "http://www.sciencedirect.com/science/article/pii/S002251931400558X", "accessDate": "2015-03-08T13:32:52Z", "PMID": "", "PMCID": "", "ISSN": "0022-5193", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "ScienceDirect", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": { "dc:replaces": "http://zotero.org/groups/143587/items/6PD5E5VB", "owl:sameAs": "http://zotero.org/users/47803/items/5Q4GHAX6" }, "dateAdded": "2015-03-08T13:32:52Z", "dateModified": "2015-08-11T12:04:28Z" } }, { "key": "SS7HSWTS", "version": 200, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/SS7HSWTS", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/SS7HSWTS", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Nonacs", "parsedDate": "2011-06-28", "numChildren": 0 }, "data": { "key": "SS7HSWTS", "version": 200, "itemType": "journalArticle", "title": "Kinship, greenbeards, and runaway social selection in the evolution of social insect cooperation", "creators": [ { "creatorType": "author", "firstName": "Peter", "lastName": "Nonacs" } ], "abstractNote": "Social Hymenoptera have played a leading role in development and testing of kin selection theory. Inclusive fitness models, following from Hamilton's rule, successfully predict major life history characteristics, such as biased sex investment ratios and conflict over parentage of male offspring. However, kin selection models poorly predict patterns of caste-biasing nepotism and reproductive skew within groups unless kin recognition constraints or group-level selection is also invoked. These successes and failures mirror the underlying kin recognition mechanisms. With reliable environmental cues, such as the sex of offspring or the origin of male eggs, predictions are supported. When only genetic recognition cues are potentially available, predictions are not supported. Mathematical simulations demonstrate that these differing mechanisms for determining kinship produce very different patterns of behavior. Decisions based on environmental cues for relatedness result in a robust mixture of cooperation and noncooperation depending on whether or not Hamilton's rule is met. In contrast, cooperation evolves under a wider range of conditions and to higher frequencies with genetic kin recognition as shared greenbeard traits. This “excess of niceness” matches the existing patterns in caste bias and reproductive skew; individuals often help others at an apparent cost to their inclusive fitness. The results further imply a potential for greenbeard-type kin recognition to create arbitrary runaway social selection for shared genetic traits. Suggestive examples in social evolution may be alloparental care and unicoloniality in ants. Differences in kin recognition mechanisms also can have consequences for maintenance of advantageous genetic diversity within populations.", "publicationTitle": "Proceedings of the National Academy of Sciences of the United States of America", "publisher": "", "place": "", "date": "2011-6-28", "volume": "108", "issue": "Suppl 2", "section": "", "partNumber": "", "partTitle": "", "pages": "10808-10815", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Proc Natl Acad Sci U S A", "DOI": "10.1073/pnas.1100297108", "citationKey": "", "url": "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3131811/", "accessDate": "2015-06-28T13:03:42Z", "PMID": "21690344", "PMCID": "PMC3131811", "ISSN": "0027-8424", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "PubMed Central", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-06-28T13:03:42Z", "dateModified": "2015-06-28T13:03:42Z" } }, { "key": "D2QBS5SX", "version": 156, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/D2QBS5SX", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/D2QBS5SX", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "André and Day", "parsedDate": "2007-07-07", "numChildren": 0 }, "data": { "key": "D2QBS5SX", "version": 156, "itemType": "journalArticle", "title": "Perfect reciprocity is the only evolutionarily stable strategy in the continuous iterated prisoner's dilemma", "creators": [ { "creatorType": "author", "firstName": "Jean-Baptiste", "lastName": "André" }, { "creatorType": "author", "firstName": "Troy", "lastName": "Day" } ], "abstractNote": "Theoretical studies have shown that cooperation tends to evolve when interacting individuals have positively correlated phenotypes. In the present article, we explore the situation where this correlation results from information exchange between social partners, and behavioral flexibility. We consider the game ‘continuous iterated prisoner's dilemma’. The level of cooperation expressed by individuals in this game, together with their ability to respond to one another, both evolve as two aspects of their behavioral strategy. The conditions for a strategy to be evolutionarily stable in this game are degenerate, and earlier works were thus unable to find a single ESS. However, a detailed invasion analysis, together with the study of evolution in finite populations, reveals that natural selection favors strategies whereby individuals respond to their opponent's actions in a perfectly mirrored (i.e., correlated) fashion. As a corollary, the overall payoff of social interactions (i.e., the amount of cooperation) is maximized because couples of correlated partners effectively become the units of selection.", "publicationTitle": "Journal of Theoretical Biology", "publisher": "", "place": "", "date": "July 7, 2007", "volume": "247", "issue": "1", "section": "", "partNumber": "", "partTitle": "", "pages": "11-22", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Journal of Theoretical Biology", "DOI": "10.1016/j.jtbi.2007.02.007", "citationKey": "", "url": "http://www.sciencedirect.com/science/article/pii/S0022519307000732", "accessDate": "2015-06-28T13:02:40Z", "PMID": "", "PMCID": "", "ISSN": "0022-5193", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "ScienceDirect", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-06-28T13:02:40Z", "dateModified": "2015-06-28T13:02:40Z" } }, { "key": "MIXX7I8M", "version": 155, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/MIXX7I8M", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/MIXX7I8M", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Ducasse et al.", "parsedDate": "2015-07-01", "numChildren": 0 }, "data": { "key": "MIXX7I8M", "version": 155, "itemType": "journalArticle", "title": "Cancer: an emergent property of disturbed resource-rich environments? Ecology meets personalized medicine", "creators": [ { "creatorType": "author", "firstName": "Hugo", "lastName": "Ducasse" }, { "creatorType": "author", "firstName": "Audrey", "lastName": "Arnal" }, { "creatorType": "author", "firstName": "Marion", "lastName": "Vittecoq" }, { "creatorType": "author", "firstName": "Simon P.", "lastName": "Daoust" }, { "creatorType": "author", "firstName": "Beata", "lastName": "Ujvari" }, { "creatorType": "author", "firstName": "Camille", "lastName": "Jacqueline" }, { "creatorType": "author", "firstName": "Tazzio", "lastName": "Tissot" }, { "creatorType": "author", "firstName": "Paul", "lastName": "Ewald" }, { "creatorType": "author", "firstName": "Robert A.", "lastName": "Gatenby" }, { "creatorType": "author", "firstName": "Kayla C.", "lastName": "King" }, { "creatorType": "author", "firstName": "François", "lastName": "Bonhomme" }, { "creatorType": "author", "firstName": "Jacques", "lastName": "Brodeur" }, { "creatorType": "author", "firstName": "François", "lastName": "Renaud" }, { "creatorType": "author", "firstName": "Eric", "lastName": "Solary" }, { "creatorType": "author", "firstName": "Benjamin", "lastName": "Roche" }, { "creatorType": "author", "firstName": "Frédéric", "lastName": "Thomas" } ], "abstractNote": "For an increasing number of biologists, cancer is viewed as a dynamic system governed by evolutionary and ecological principles. Throughout most of human history, cancer was an uncommon cause of death and it is generally accepted that common components of modern culture, including increased physiological stresses and caloric intake, favor cancer development. However, the precise mechanisms for this linkage are not well understood. Here, we examine the roles of ecological and physiological disturbances and resource availability on the emergence of cancer in multicellular organisms. We argue that proliferation of ‘profiteering phenotypes’ is often an emergent property of disturbed, resource-rich environments at all scales of biological organization. We review the evidence for this phenomenon, explore it within the context of malignancy, and discuss how this ecological framework may offer a theoretical background for novel strategies of cancer prevention. This work provides a compelling argument that the traditional separation between medicine and evolutionary ecology remains a fundamental limitation that needs to be overcome if complex processes, such as oncogenesis, are to be completely understood.", "publicationTitle": "Evolutionary Applications", "publisher": "", "place": "", "date": "July 1, 2015", "volume": "8", "issue": "6", "section": "", "partNumber": "", "partTitle": "", "pages": "527-540", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Evol Appl", "DOI": "10.1111/eva.12232", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/eva.12232/abstract", "accessDate": "2015-06-28T12:55:25Z", "PMID": "", "PMCID": "", "ISSN": "1752-4571", "archive": "", "archiveLocation": "", "shortTitle": "Cancer", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2014 The Authors. Evolutionary Applications published by John Wiley & Sons Ltd., This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.", "extra": "", "tags": [], "collections": [ "SF43QWK4" ], "relations": {}, "dateAdded": "2015-06-28T12:55:25Z", "dateModified": "2015-06-28T12:55:25Z" } }, { "key": "TFS83SS6", "version": 201, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/TFS83SS6", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/TFS83SS6", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Akçay et al.", "parsedDate": "2012-09-11", "numChildren": 1 }, "data": { "key": "TFS83SS6", "version": 201, "itemType": "journalArticle", "title": "Evolution of cooperation and skew under imperfect information", "creators": [ { "creatorType": "author", "firstName": "Erol", "lastName": "Akçay" }, { "creatorType": "author", "firstName": "Adam", "lastName": "Meirowitz" }, { "creatorType": "author", "firstName": "Kristopher W.", "lastName": "Ramsay" }, { "creatorType": "author", "firstName": "Simon A.", "lastName": "Levin" } ], "abstractNote": "The evolution of cooperation in nature and human societies depends crucially on how the benefits from cooperation are divided and whether individuals have complete information about their payoffs. We tackle these questions by adopting a methodology from economics called mechanism design. Focusing on reproductive skew as a case study, we show that full cooperation may not be achievable due to private information over individuals’ outside options, regardless of the details of the specific biological or social interaction. Further, we consider how the structure of the interaction can evolve to promote the maximum amount of cooperation in the face of the informational constraints. Our results point to a distinct avenue for investigating how cooperation can evolve when the division of benefits is flexible and individuals have private information.", "publicationTitle": "Proceedings of the National Academy of Sciences", "publisher": "", "place": "", "date": "09/11/2012", "volume": "109", "issue": "37", "section": "", "partNumber": "", "partTitle": "", "pages": "14936-14941", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "PNAS", "DOI": "10.1073/pnas.1212925109", "citationKey": "", "url": "http://www.pnas.org/content/109/37/14936", "accessDate": "2015-05-30T15:38:51Z", "PMID": "22908269", "PMCID": "", "ISSN": "0027-8424, 1091-6490", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "www.pnas.org", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "BPAEPKF5", "RP3ZIN5H" ], "relations": { "dc:replaces": "http://zotero.org/groups/143587/items/S44FKRT6" }, "dateAdded": "2015-05-30T15:38:51Z", "dateModified": "2015-06-23T07:32:24Z" } }, { "key": "P6P2ZC82", "version": 153, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/P6P2ZC82", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/P6P2ZC82", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Sherratt and Mesterton-Gibbons", "parsedDate": "2015-06-01", "numChildren": 0 }, "data": { "key": "P6P2ZC82", "version": 153, "itemType": "journalArticle", "title": "The evolution of respect for property", "creators": [ { "creatorType": "author", "firstName": "T. N.", "lastName": "Sherratt" }, { "creatorType": "author", "firstName": "M.", "lastName": "Mesterton-Gibbons" } ], "abstractNote": "Although possession is ‘nine-tenths of the law’, respect for ownership is widespread in the animal kingdom even without third-party enforcement. Thus, the first individuals to find objects are frequently left unchallenged by potential competitors and tend to win contests when disputes arise. Game theory has shown that respect for ownership (‘Bourgeois’ behaviour) can arise as an arbitrary convention to avoid costly disputes. However, the same theory predicts that a paradoxical respect for lack of ownership (‘anti-Bourgeois’ behaviour) can evolve under the same conditions and in some cases is the only stable outcome. Despite these predictions, anti-Bourgeois behaviour is rare in nature, whereas respect for ownership is frequently not absolute. Here, we review extensions of the classic models involving repeated interactions, confusion over roles, strategic coordination of behaviour (‘secret handshakes’), owner–intruder asymmetries and continuous control of fighting investment. Confusion over roles and owner–intruder asymmetries in fighting ability may explain why respect for ownership is often partial. Moreover, although most model extensions facilitate the evolution of Bourgeois-like behaviour, secret handshakes and continuous control of fighting investment render the alternative anti-Bourgeois convention unstable. We develop these insights to highlight several key areas for future investigation.", "publicationTitle": "Journal of Evolutionary Biology", "publisher": "", "place": "", "date": "June 1, 2015", "volume": "28", "issue": "6", "section": "", "partNumber": "", "partTitle": "", "pages": "1185-1202", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "J. Evol. Biol.", "DOI": "10.1111/jeb.12648", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/jeb.12648/abstract", "accessDate": "2015-06-23T07:31:19Z", "PMID": "", "PMCID": "", "ISSN": "1420-9101", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2015 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2015 European Society For Evolutionary Biology", "extra": "", "tags": [], "collections": [ "BPAEPKF5", "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-06-23T07:31:19Z", "dateModified": "2015-06-23T07:31:19Z" } }, { "key": "XM5N7RHB", "version": 202, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/XM5N7RHB", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/XM5N7RHB", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Presnyak et al.", "parsedDate": "2015-12-03", "numChildren": 1 }, "data": { "key": "XM5N7RHB", "version": 202, "itemType": "journalArticle", "title": "Codon Optimality Is a Major Determinant of mRNA Stability", "creators": [ { "creatorType": "author", "firstName": "Vladimir", "lastName": "Presnyak" }, { "creatorType": "author", "firstName": "Najwa", "lastName": "Alhusaini" }, { "creatorType": "author", "firstName": "Ying-Hsin", "lastName": "Chen" }, { "creatorType": "author", "firstName": "Sophie", "lastName": "Martin" }, { "creatorType": "author", "firstName": "Nathan", "lastName": "Morris" }, { "creatorType": "author", "firstName": "Nicholas", "lastName": "Kline" }, { "creatorType": "author", "firstName": "Sara", "lastName": "Olson" }, { "creatorType": "author", "firstName": "David", "lastName": "Weinberg" }, { "creatorType": "author", "firstName": "Kristian E.", "lastName": "Baker" }, { "creatorType": "author", "firstName": "Brenton R.", "lastName": "Graveley" }, { "creatorType": "author", "firstName": "Jeff", "lastName": "Coller" } ], "abstractNote": "mRNA degradation represents a critical regulated step in gene expression. Although the major pathways in turnover have been identified, accounting for disparate half-lives has been elusive. We show that codon optimality is one feature that contributes greatly to mRNA stability. Genome-wide RNA decay analysis revealed that stable mRNAs are enriched in codons designated optimal, whereas unstable mRNAs contain predominately non-optimal codons. Substitution of optimal codons with synonymous, non-optimal codons results in dramatic mRNA destabilization, whereas the converse substitution significantly increases stability. Further, we demonstrate that codon optimality impacts ribosome translocation, connecting the processes of translation elongation and decay through codon optimality. Finally, we show that optimal codon content accounts for the similar stabilities observed in mRNAs encoding proteins with coordinated physiological function. This work demonstrates that codon optimization exists as a mechanism to finely tune levels of mRNAs and, ultimately, proteins.", "publicationTitle": "Cell", "publisher": "", "place": "", "date": "12/03/2015", "volume": "160", "issue": "6", "section": "", "partNumber": "", "partTitle": "", "pages": "1111-1124", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1016/j.cell.2015.02.029", "citationKey": "", "url": "http://www.cell.com/article/S0092867415001956/abstract", "accessDate": "2015-06-19T15:46:40Z", "PMID": "25768907", "PMCID": "", "ISSN": "0092-8674", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "English", "libraryCatalog": "www.cell.com", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-06-19T15:46:40Z", "dateModified": "2015-06-19T15:46:40Z" } }, { "key": "THHAZCKP", "version": 152, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/THHAZCKP", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/THHAZCKP", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/143587/items/XM5N7RHB", "type": "application/json" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } } }, "data": { "key": "THHAZCKP", "version": 152, "parentItem": "XM5N7RHB", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2015-06-19T15:46:40Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/25768907", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2015-06-19T15:46:40Z", "dateModified": "2015-06-19T15:46:40Z" } }, { "key": "MAN7ZDRM", "version": 151, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/MAN7ZDRM", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/MAN7ZDRM", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Santos et al.", "parsedDate": "2015-08-07", "numChildren": 0 }, "data": { "key": "MAN7ZDRM", "version": 151, "itemType": "journalArticle", "title": "Evolutionary dynamics of group fairness", "creators": [ { "creatorType": "author", "firstName": "Fernando P.", "lastName": "Santos" }, { "creatorType": "author", "firstName": "Francisco C.", "lastName": "Santos" }, { "creatorType": "author", "firstName": "Ana", "lastName": "Paiva" }, { "creatorType": "author", "firstName": "Jorge M.", "lastName": "Pacheco" } ], "abstractNote": "The emergence and impact of fairness is commonly studied in the context of 2-person games, notably the Ultimatum Game. Often, however, humans face problems of collective action involving more than two individuals where fairness is known to play a very important role, and whose dynamics cannot be inferred from what is known from 2-person games. Here, we propose a generalization of the Ultimatum Game for an arbitrary number of players – the Multiplayer Ultimatum Game. Proposals are made to a group of responders who must individually reject or accept the proposal. If the total number of individual acceptances stands below a given threshold, the offer will be rejected; otherwise, the offer will be accepted, and equally shared by all responders. We investigate the evolution of fairness in populations of individuals by means of evolutionary game theory, providing both analytical insights and results from numerical simulations. We show how imposing stringent consensuses significantly increases the value of the proposals, leading to fairer outcomes and more tolerant players. Furthermore, we show how stochastic effects – such as imitation errors and/or errors when assessing the fitness of others – may further enhance the overall success in reaching fair collective action.", "publicationTitle": "Journal of Theoretical Biology", "publisher": "", "place": "", "date": "August 7, 2015", "volume": "378", "issue": "", "section": "", "partNumber": "", "partTitle": "", "pages": "96-102", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Journal of Theoretical Biology", "DOI": "10.1016/j.jtbi.2015.04.025", "citationKey": "", "url": "http://www.sciencedirect.com/science/article/pii/S0022519315002015", "accessDate": "2015-06-15T01:17:47Z", "PMID": "", "PMCID": "", "ISSN": "0022-5193", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "ScienceDirect", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "BPAEPKF5", "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-06-15T01:17:47Z", "dateModified": "2015-06-15T01:17:47Z" } }, { "key": "ZIC8UG75", "version": 150, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/ZIC8UG75", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/ZIC8UG75", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Woolf", "parsedDate": "2015-03-27", "numChildren": 0 }, "data": { "key": "ZIC8UG75", "version": 150, "itemType": "journalArticle", "title": "A Hypothesis About the Origin of Biology", "creators": [ { "creatorType": "author", "firstName": "Neville J.", "lastName": "Woolf" } ], "abstractNote": "It is proposed that processes characteristic of biology today, autocatalysis, selection of molecules for linkage by their electrical shape, and evolution by survival selection were also the processes that initiated biology. A reconnaissance is made of both paradoxes and potential questions. It is argued that the minimal requirement for initiating Darwinian evolution is not a molecule copying process, but a linkage copying process. Survival selection evolution does not require a heterocatalytic polymer and a separate replicase process until there is uncertainty where molecular additions will occur. It is argued that a linkage directing process will be found for a lipid membrane (though this needs to be verified) and may in the right environment result in initial evolution, including initiation of α-helices, the development of a single chirality and NTPs. The system has at this point become sufficiently complex that higher precision copying is needed. However it seems likely that this state is able to generate the first miniature ribozymes and their replicases, and so satisfies the prior requirement. With the proposed requirements, it is likely that the development of polymers was within membranes.", "publicationTitle": "Origins of Life and Evolution of Biospheres", "publisher": "", "place": "", "date": "2015/03/27", "volume": "45", "issue": "1-2", "section": "", "partNumber": "", "partTitle": "", "pages": "257-274", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Orig Life Evol Biosph", "DOI": "10.1007/s11084-015-9426-5", "citationKey": "", "url": "http://link.springer.com/article/10.1007/s11084-015-9426-5", "accessDate": "2015-06-10T11:56:05Z", "PMID": "", "PMCID": "", "ISSN": "0169-6149, 1573-0875", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "link.springer.com", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-06-10T11:56:05Z", "dateModified": "2015-06-10T11:56:05Z" } }, { "key": "FPVEDNEM", "version": 149, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/FPVEDNEM", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/FPVEDNEM", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "André and Morin", "parsedDate": "2011-12-01", "numChildren": 0 }, "data": { "key": "FPVEDNEM", "version": 149, "itemType": "journalArticle", "title": "Questioning the cultural evolution of altruism", "creators": [ { "creatorType": "author", "firstName": "J.-B.", "lastName": "André" }, { "creatorType": "author", "firstName": "O.", "lastName": "Morin" } ], "abstractNote": "The evolutionary foundations of helping among nonkin in humans have been the object of intense debates in the past decades. One thesis has had a prominent influence in this debate: the suggestion that genuine altruism, strictly defined as a form of help that comes at a net fitness cost for the benefactor, might have evolved owing to cultural transmission. The gene–culture coevolution literature is wont to claim that cultural evolution changes the selective pressures that normally act to limit the emergence of altruistic behaviours. This paper aims to recall, however, that cultural transmission yields altruism only to the extent that it relies on maladaptive mechanisms, such as conformist imitation and (in some cases) payoff-biased transmission. This point is sometimes obscured in the literature by a confusion between genuine altruism, maladaptive by definition, and mutualistic forms of cooperation, that benefit all parties in the long run. Theories of cultural altruism do not lift the selective pressures weighing on strictly altruistic actions; they merely shift the burden of maladaptation from social cognition to cultural transmission.", "publicationTitle": "Journal of Evolutionary Biology", "publisher": "", "place": "", "date": "December 1, 2011", "volume": "24", "issue": "12", "section": "", "partNumber": "", "partTitle": "", "pages": "2531-2542", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1111/j.1420-9101.2011.02398.x", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/j.1420-9101.2011.02398.x/abstract", "accessDate": "2015-06-05T16:16:20Z", "PMID": "", "PMCID": "", "ISSN": "1420-9101", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2011 The Authors. Journal of Evolutionary Biology © 2011 European Society For Evolutionary Biology", "extra": "", "tags": [], "collections": [ "BPAEPKF5" ], "relations": {}, "dateAdded": "2015-06-05T16:16:20Z", "dateModified": "2015-06-05T16:16:20Z" } }, { "key": "MCMFI5N6", "version": 148, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/MCMFI5N6", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/MCMFI5N6", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Nikolić", "parsedDate": "2015-05-21", "numChildren": 0 }, "data": { "key": "MCMFI5N6", "version": 148, "itemType": "journalArticle", "title": "Practopoiesis: Or how life fosters a mind", "creators": [ { "creatorType": "author", "firstName": "Danko", "lastName": "Nikolić" } ], "abstractNote": "The mind is a biological phenomenon. Thus, biological principles of organization should also be the principles underlying mental operations. Practopoiesis states that the key for achieving intelligence through adaptation is an arrangement in which mechanisms laying at a lower level of organization, by their operations and interaction with the environment, enable creation of mechanisms laying at a higher level of organization. When such an organizational advance of a system occurs, it is called a traverse. A case of traverse is when plasticity mechanisms (at a lower level of organization), by their operations, create a neural network anatomy (at a higher level of organization). Another case is the actual production of behavior by that network, whereby the mechanisms of neuronal activity operate to create motor actions. Practopoietic theory explains why the adaptability of a system increases with each increase in the number of traverses. With a larger number of traverses, a system can be relatively small and yet, produce a higher degree of adaptive/intelligent behavior than a system with a lower number of traverses. The present analyses indicate that the two well-known traverses – neural plasticity and neural activity – are not sufficient to explain human mental capabilities. At least one additional traverse is needed, which is named anapoiesis for its contribution in reconstructing knowledge e.g., from long-term memory into working memory. The conclusions bear implications for brain theory, the mind–body explanatory gap, and developments of artificial intelligence technologies.", "publicationTitle": "Journal of Theoretical Biology", "publisher": "", "place": "", "date": "May 21, 2015", "volume": "373", "issue": "", "section": "", "partNumber": "", "partTitle": "", "pages": "40-61", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Journal of Theoretical Biology", "DOI": "10.1016/j.jtbi.2015.03.003", "citationKey": "", "url": "http://www.sciencedirect.com/science/article/pii/S002251931500106X", "accessDate": "2015-06-05T16:14:15Z", "PMID": "", "PMCID": "", "ISSN": "0022-5193", "archive": "", "archiveLocation": "", "shortTitle": "Practopoiesis", "language": "", "libraryCatalog": "ScienceDirect", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "PINKTTDI", "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-06-05T16:14:15Z", "dateModified": "2015-06-05T16:14:15Z" } }, { "key": "74H8ETQS", "version": 147, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/74H8ETQS", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/74H8ETQS", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Allen and Nowak", "parsedDate": "2015-08-07", "numChildren": 0 }, "data": { "key": "74H8ETQS", "version": 147, "itemType": "journalArticle", "title": "Games among relatives revisited", "creators": [ { "creatorType": "author", "firstName": "Benjamin", "lastName": "Allen" }, { "creatorType": "author", "firstName": "Martin A.", "lastName": "Nowak" } ], "abstractNote": "We present a simple model for the evolution of social behavior in family-structured, finite sized populations. Interactions are represented as evolutionary games describing frequency-dependent selection. Individuals interact more frequently with siblings than with members of the general population, as quantified by an assortment parameter r, which can be interpreted as “relatedness”. Other models, mostly of spatially structured populations, have shown that assortment can promote the evolution of cooperation by facilitating interaction between cooperators, but this effect depends on the details of the evolutionary process. For our model, we find that sibling assortment promotes cooperation in stringent social dilemmas such as the Prisoner׳s Dilemma, but not necessarily in other situations. These results are obtained through straightforward calculations of changes in gene frequency. We also analyze our model using inclusive fitness. We find that the quantity of inclusive fitness does not exist for general games. For special games, where inclusive fitness exists, it provides less information than the straightforward analysis.", "publicationTitle": "Journal of Theoretical Biology", "publisher": "", "place": "", "date": "August 7, 2015", "volume": "378", "issue": "", "section": "", "partNumber": "", "partTitle": "", "pages": "103-116", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Journal of Theoretical Biology", "DOI": "10.1016/j.jtbi.2015.04.031", "citationKey": "", "url": "http://www.sciencedirect.com/science/article/pii/S0022519315002131", "accessDate": "2015-06-05T16:13:27Z", "PMID": "", "PMCID": "", "ISSN": "0022-5193", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "ScienceDirect", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-06-05T16:13:27Z", "dateModified": "2015-06-05T16:13:27Z" } }, { "key": "VE9WVFB6", "version": 203, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/VE9WVFB6", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/VE9WVFB6", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Baumard and Boyer", "parsedDate": "2013-01-06", "numChildren": 1 }, "data": { "key": "VE9WVFB6", "version": 203, "itemType": "journalArticle", "title": "Explaining moral religions", "creators": [ { "creatorType": "author", "firstName": "Nicolas", "lastName": "Baumard" }, { "creatorType": "author", "firstName": "Pascal", "lastName": "Boyer" } ], "abstractNote": "Moralizing religions, unlike religions with morally indifferent gods or spirits, appeared only recently in some (but not all) large-scale human societies. A crucial feature of these new religions is their emphasis on proportionality (between deeds and supernatural rewards, between sins and penance, and in the formulation of the Golden Rule, according to which one should treat others as one would like others to treat oneself). Cognitive science models that account for many properties of religion can be extended to these religions. Recent models of evolved dispositions for fairness in cooperation suggest that proportionality-based morality is highly intuitive to human beings. The cultural success of moralizing movements, secular or religious, could be explained based on proportionality.", "publicationTitle": "Trends in Cognitive Sciences", "publisher": "", "place": "", "date": "01/06/2013", "volume": "17", "issue": "6", "section": "", "partNumber": "", "partTitle": "", "pages": "272-280", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "", "DOI": "10.1016/j.tics.2013.04.003", "citationKey": "", "url": "http://www.cell.com/article/S1364661313000764/abstract", "accessDate": "2015-05-30T15:52:17Z", "PMID": "23664451", "PMCID": "", "ISSN": "1364-6613", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "English", "libraryCatalog": "www.cell.com", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "BPAEPKF5", "PINKTTDI" ], "relations": {}, "dateAdded": "2015-05-30T15:52:17Z", "dateModified": "2015-05-30T15:52:17Z" } }, { "key": "VAJDE5FP", "version": 146, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/VAJDE5FP", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/VAJDE5FP", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/143587/items/VE9WVFB6", "type": "application/json" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } } }, "data": { "key": "VAJDE5FP", "version": 146, "parentItem": "VE9WVFB6", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2015-05-30T15:52:17Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/23664451", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2015-05-30T15:52:17Z", "dateModified": "2015-05-30T15:52:17Z" } }, { "key": "CMGV3QJI", "version": 145, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/CMGV3QJI", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/CMGV3QJI", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "El Mouden et al.", "parsedDate": "2014-02-01", "numChildren": 0 }, "data": { "key": "CMGV3QJI", "version": 145, "itemType": "journalArticle", "title": "Cultural transmission and the evolution of human behaviour: a general approach based on the Price equation", "creators": [ { "creatorType": "author", "firstName": "C.", "lastName": "El Mouden" }, { "creatorType": "author", "firstName": "J.-B.", "lastName": "André" }, { "creatorType": "author", "firstName": "O.", "lastName": "Morin" }, { "creatorType": "author", "firstName": "D.", "lastName": "Nettle" } ], "abstractNote": "Transmitted culture can be viewed as an inheritance system somewhat independent of genes that is subject to processes of descent with modification in its own right. Although many authors have conceptualized cultural change as a Darwinian process, there is no generally agreed formal framework for defining key concepts such as natural selection, fitness, relatedness and altruism for the cultural case. Here, we present and explore such a framework using the Price equation. Assuming an isolated, independently measurable culturally transmitted trait, we show that cultural natural selection maximizes cultural fitness, a distinct quantity from genetic fitness, and also that cultural relatedness and cultural altruism are not reducible to or necessarily related to their genetic counterparts. We show that antagonistic coevolution will occur between genes and culture whenever cultural fitness is not perfectly aligned with genetic fitness, as genetic selection will shape psychological mechanisms to avoid susceptibility to cultural traits that bear a genetic fitness cost. We discuss the difficulties with conceptualizing cultural change using the framework of evolutionary theory, the degree to which cultural evolution is autonomous from genetic evolution, and the extent to which cultural change should be seen as a Darwinian process. We argue that the nonselection components of evolutionary change are much more important for culture than for genes, and that this and other important differences from the genetic case mean that different approaches and emphases are needed for cultural than genetic processes.", "publicationTitle": "Journal of Evolutionary Biology", "publisher": "", "place": "", "date": "February 1, 2014", "volume": "27", "issue": "2", "section": "", "partNumber": "", "partTitle": "", "pages": "231-241", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "J. Evol. Biol.", "DOI": "10.1111/jeb.12296", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/jeb.12296/abstract", "accessDate": "2015-05-30T15:46:09Z", "PMID": "", "PMCID": "", "ISSN": "1420-9101", "archive": "", "archiveLocation": "", "shortTitle": "Cultural transmission and the evolution of human behaviour", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2013 The Authors. Journal of Evolutionary Biology © 2013 European Society For Evolutionary Biology", "extra": "", "tags": [], "collections": [ "BPAEPKF5", "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-05-30T15:46:09Z", "dateModified": "2015-05-30T15:46:09Z" } }, { "key": "NICSG4WF", "version": 144, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/NICSG4WF", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/NICSG4WF", "type": "text/html" }, "up": { "href": "https://api.zotero.org/groups/143587/items/TFS83SS6", "type": "application/json" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } } }, "data": { "key": "NICSG4WF", "version": 144, "parentItem": "TFS83SS6", "itemType": "attachment", "linkMode": "linked_url", "title": "PubMed entry", "accessDate": "2015-05-30T15:38:51Z", "url": "http://www.ncbi.nlm.nih.gov/pubmed/22908269", "note": "", "contentType": "text/html", "charset": "", "tags": [], "relations": {}, "dateAdded": "2015-05-30T15:38:51Z", "dateModified": "2015-05-30T15:38:51Z" } }, { "key": "BJ2P8XNJ", "version": 143, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/BJ2P8XNJ", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/BJ2P8XNJ", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Gilbert and Manica", "parsedDate": "2015-05-01", "numChildren": 0 }, "data": { "key": "BJ2P8XNJ", "version": 143, "itemType": "journalArticle", "title": "The evolution of parental care in insects: A test of current hypotheses", "creators": [ { "creatorType": "author", "firstName": "James D. J.", "lastName": "Gilbert" }, { "creatorType": "author", "firstName": "Andrea", "lastName": "Manica" } ], "abstractNote": "Which sex should care for offspring is a fundamental question in evolution. Invertebrates, and insects in particular, show some of the most diverse kinds of parental care of all animals, but to date there has been no broad comparative study of the evolution of parental care in this group. Here, we test existing hypotheses of insect parental care evolution using a literature-compiled phylogeny of over 2000 species. To address substantial uncertainty in the insect phylogeny, we use a brute force approach based on multiple random resolutions of uncertain nodes. The main transitions were between no care (the probable ancestral state) and female care. Male care evolved exclusively from no care, supporting models where mating opportunity costs for caring males are reduced—for example, by caring for multiple broods—but rejecting the “enhanced fecundity” hypothesis that male care is favored because it allows females to avoid care costs. Biparental care largely arose by males joining caring females, and was more labile in Holometabola than in Hemimetabola. Insect care evolution most closely resembled amphibian care in general trajectory. Integrating these findings with the wealth of life history and ecological data in insects will allow testing of a rich vein of existing hypotheses.", "publicationTitle": "Evolution", "publisher": "", "place": "", "date": "May 1, 2015", "volume": "69", "issue": "5", "section": "", "partNumber": "", "partTitle": "", "pages": "1255-1270", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Evolution", "DOI": "10.1111/evo.12656", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/evo.12656/abstract", "accessDate": "2015-05-30T15:34:27Z", "PMID": "", "PMCID": "", "ISSN": "1558-5646", "archive": "", "archiveLocation": "", "shortTitle": "The evolution of parental care in insects", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2015 The Author(s). Evolution published by Wiley Periodicals, Inc. on behalf of The Society for the Study of Evolution., This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-05-30T15:34:27Z", "dateModified": "2015-05-30T15:34:27Z" } }, { "key": "BU9NWHAI", "version": 142, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/BU9NWHAI", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/BU9NWHAI", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Wolf et al.", "parsedDate": "2015-04-20", "numChildren": 0 }, "data": { "key": "BU9NWHAI", "version": 142, "itemType": "journalArticle", "title": "Fitness Trade-offs Result in the Illusion of Social Success", "creators": [ { "creatorType": "author", "firstName": "Jason B.", "lastName": "Wolf" }, { "creatorType": "author", "firstName": "Jennifer A.", "lastName": "Howie" }, { "creatorType": "author", "firstName": "Katie", "lastName": "Parkinson" }, { "creatorType": "author", "firstName": "Nicole", "lastName": "Gruenheit" }, { "creatorType": "author", "firstName": "Diogo", "lastName": "Melo" }, { "creatorType": "author", "firstName": "Daniel", "lastName": "Rozen" }, { "creatorType": "author", "firstName": "Christopher R. L.", "lastName": "Thompson" } ], "abstractNote": "Summary\nCooperation is ubiquitous across the tree of life, from simple microbes to the complex social systems of animals [1]. Individuals cooperate by engaging in costly behaviors that can be exploited by other individuals who benefit by avoiding these associated costs. Thus, if successful exploitation of social partners during cooperative interactions increases relative fitness, then we expect selection to lead to the emergence of a single optimal winning strategy in which individuals maximize their gain from cooperation while minimizing their associated costs [2]. Such social “cheating” appears to be widespread in nature [3], including in several microbial systems [4–11], but despite the fitness advantages favoring social cheating, populations tend to harbor significant variation in social success rather than a single optimal winning strategy. Using the social amoeba Dictyostelium discoideum, we provide a possible explanation for the coexistence of such variation. We find that genotypes typically designated as “cheaters” [12] because they produce a disproportionate number of spores in chimeric fruiting bodies do not actually gain higher fitness as a result of this apparent advantage because they produce smaller, less viable spores than putative “losers.” As a consequence of this trade-off between spore number and viability, genotypes with different spore production strategies, which give the appearance of differential social success, ultimately have similar realized fitness. These findings highlight the limitations of using single fitness proxies in evolutionary studies and suggest that interpreting social trait variation in terms of strategies like cheating or cooperating may be misleading unless these behaviors are considered in the context of the true multidimensional nature of fitness.", "publicationTitle": "Current Biology", "publisher": "", "place": "", "date": "April 20, 2015", "volume": "25", "issue": "8", "section": "", "partNumber": "", "partTitle": "", "pages": "1086-1090", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Current Biology", "DOI": "10.1016/j.cub.2015.02.061", "citationKey": "", "url": "http://www.sciencedirect.com/science/article/pii/S0960982215002638", "accessDate": "2015-05-12T07:15:52Z", "PMID": "", "PMCID": "", "ISSN": "0960-9822", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "", "libraryCatalog": "ScienceDirect", "callNumber": "", "rights": "", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-05-12T07:15:52Z", "dateModified": "2015-05-12T07:15:52Z" } }, { "key": "MCNAADM3", "version": 139, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/MCNAADM3", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/MCNAADM3", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Levin et al.", "parsedDate": "2015-04-01", "numChildren": 0 }, "data": { "key": "MCNAADM3", "version": 139, "itemType": "journalArticle", "title": "Concurrent coevolution of intra-organismal cheaters and resisters", "creators": [ { "creatorType": "author", "firstName": "S. R.", "lastName": "Levin" }, { "creatorType": "author", "firstName": "D. A.", "lastName": "Brock" }, { "creatorType": "author", "firstName": "D. C.", "lastName": "Queller" }, { "creatorType": "author", "firstName": "J. E.", "lastName": "Strassmann" } ], "abstractNote": "The evolution of multicellularity is a major transition that is not yet fully understood. Specifically, we do not know whether there are any mechanisms by which multicellularity can be maintained without a single-cell bottleneck or other relatedness-enhancing mechanisms. Under low relatedness, cheaters can evolve that benefit from the altruistic behaviour of others without themselves sacrificing. If these are obligate cheaters, incapable of cooperating, their spread can lead to the demise of multicellularity. One possibility, however, is that cooperators can evolve resistance to cheaters. We tested this idea in a facultatively multicellular social amoeba, Dictyostelium discoideum. This amoeba usually exists as a single cell but, when stressed, thousands of cells aggregate to form a multicellular organism in which some of the cells sacrifice for the good of others. We used lineages that had undergone experimental evolution at very low relatedness, during which time obligate cheaters evolved. Unlike earlier experiments, which found resistance to cheaters that were prevented from evolving, we competed cheaters and noncheaters that evolved together, and cheaters with their ancestors. We found that noncheaters can evolve resistance to cheating before cheating sweeps through the population and multicellularity is lost. Our results provide insight into cheater–resister coevolutionary dynamics, in turn providing experimental evidence for the maintenance of at least a simple form of multicellularity by means other than high relatedness.", "publicationTitle": "Journal of Evolutionary Biology", "publisher": "", "place": "", "date": "April 1, 2015", "volume": "28", "issue": "4", "section": "", "partNumber": "", "partTitle": "", "pages": "756-765", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "J. Evol. Biol.", "DOI": "10.1111/jeb.12618", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/jeb.12618/abstract", "accessDate": "2015-05-09T08:44:35Z", "PMID": "", "PMCID": "", "ISSN": "1420-9101", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2015 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2015 European Society For Evolutionary Biology", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-05-09T08:44:35Z", "dateModified": "2015-05-09T08:44:35Z" } }, { "key": "26HS5MWX", "version": 137, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/26HS5MWX", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/26HS5MWX", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Gardner", "parsedDate": "2015-02-01", "numChildren": 0 }, "data": { "key": "26HS5MWX", "version": 137, "itemType": "journalArticle", "title": "The genetical theory of multilevel selection", "creators": [ { "creatorType": "author", "firstName": "A.", "lastName": "Gardner" } ], "abstractNote": "The theory of multilevel selection (MLS) is beset with conceptual difficulties. Although it is widely agreed that covariance between group trait and group fitness may arise in the natural world and drive a response to ‘group selection’, ambiguity exists over the precise meaning of group trait and group fitness and as to whether group selection should be defined according to changes in frequencies of different types of individual or different types of group. Moreover, the theory of MLS has failed to properly engage with the problem of class structure, which greatly limits its empirical application to, for example, social insects whose colonies are structured into separate age, sex, caste and ploidy classes. Here, I develop a genetical theory of MLS, to address these problems. I show that taking a genetical approach facilitates a decomposition of group-level traits – including reproductive success – into the separate contributions made by each constituent individual, even in the context of so-called emergence. However, I uncover a novel problem with the group-oriented approach: in many scenarios, it may not be possible to express a meaningful covariance between trait and fitness at the level of the social group, because the group's constituents belong to separate, irreconcilable classes.", "publicationTitle": "Journal of Evolutionary Biology", "publisher": "", "place": "", "date": "February 1, 2015", "volume": "28", "issue": "2", "section": "", "partNumber": "", "partTitle": "", "pages": "305-319", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "J. Evol. Biol.", "DOI": "10.1111/jeb.12566", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/jeb.12566/abstract", "accessDate": "2015-04-10T15:09:26Z", "PMID": "", "PMCID": "", "ISSN": "1420-9101", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2014 The Author. Journal of Evolutionary Biology published by John Wiley & Sons Ltd on behalf of European Society for Evolutionary Biology., This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": {}, "dateAdded": "2015-04-10T15:09:26Z", "dateModified": "2015-04-10T15:09:26Z" } }, { "key": "SQM624EX", "version": 136, "library": { "type": "group", "id": 143587, "name": "Int. Sciences", "links": { "alternate": { "href": "https://www.zotero.org/groups/int._sciences", "type": "text/html" } } }, "links": { "self": { "href": "https://api.zotero.org/groups/143587/items/SQM624EX", "type": "application/json" }, "alternate": { "href": "https://www.zotero.org/groups/int._sciences/items/SQM624EX", "type": "text/html" } }, "meta": { "createdByUser": { "id": 47803, "username": "akedemo", "name": "Somsak Likhitrattanapisal", "links": { "alternate": { "href": "https://www.zotero.org/akedemo", "type": "text/html" } } }, "creatorSummary": "Melnyk et al.", "parsedDate": "2015", "numChildren": 0 }, "data": { "key": "SQM624EX", "version": 136, "itemType": "journalArticle", "title": "The fitness costs of antibiotic resistance mutations", "creators": [ { "creatorType": "author", "firstName": "Anita H.", "lastName": "Melnyk" }, { "creatorType": "author", "firstName": "Alex", "lastName": "Wong" }, { "creatorType": "author", "firstName": "Rees", "lastName": "Kassen" } ], "abstractNote": "Antibiotic resistance is increasing in pathogenic microbial populations and is thus a major threat to public health. The fate of a resistance mutation in pathogen populations is determined in part by its fitness. Mutations that suffer little or no fitness cost are more likely to persist in the absence of antibiotic treatment. In this review, we performed a meta-analysis to investigate the fitness costs associated with single mutational events that confer resistance. Generally, these mutations were costly, although several drug classes and species of bacteria on average did not show a cost. Further investigations into the rate and fitness values of compensatory mutations that alleviate the costs of resistance will help us to better understand both the emergence and management of antibiotic resistance in clinical settings.", "publicationTitle": "Evolutionary Applications", "publisher": "", "place": "", "date": "2015", "volume": "8", "issue": "3", "section": "", "partNumber": "", "partTitle": "", "pages": "273-283", "series": "", "seriesTitle": "", "seriesText": "", "journalAbbreviation": "Evol Appl", "DOI": "10.1111/eva.12196", "citationKey": "", "url": "http://onlinelibrary.wiley.com/doi/10.1111/eva.12196/abstract", "accessDate": "2015-04-01T15:32:39Z", "PMID": "", "PMCID": "", "ISSN": "1752-4571", "archive": "", "archiveLocation": "", "shortTitle": "", "language": "en", "libraryCatalog": "Wiley Online Library", "callNumber": "", "rights": "© 2014 The Authors. Evolutionary Applications published by John Wiley & Sons Ltd., This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.", "extra": "", "tags": [], "collections": [ "RP3ZIN5H" ], "relations": { "dc:replaces": "http://zotero.org/groups/143587/items/5XNM6877" }, "dateAdded": "2015-04-01T15:32:39Z", "dateModified": "2015-04-01T15:32:50Z" } } ]